Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LAZ82_RS00350 Genome accession   NZ_CP083589
Coordinates   80023..81558 (-) Length   511 a.a.
NCBI ID   WP_234295180.1    Uniprot ID   -
Organism   Herbaspirillum frisingense strain AU14559     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 75023..86558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ82_RS00330 (LAZ82_00330) - 76042..76386 (-) 345 WP_102664087.1 DUF1840 domain-containing protein -
  LAZ82_RS00335 (LAZ82_00335) - 76564..77091 (-) 528 WP_234295178.1 hypothetical protein -
  LAZ82_RS00340 (LAZ82_00340) - 77233..79238 (+) 2006 Protein_67 OPT family oligopeptide transporter -
  LAZ82_RS00345 (LAZ82_00345) - 79247..79879 (-) 633 WP_234295179.1 LysE family translocator -
  LAZ82_RS00350 (LAZ82_00350) comM 80023..81558 (-) 1536 WP_234295180.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LAZ82_RS00355 (LAZ82_00355) - 81626..81871 (-) 246 WP_006713294.1 accessory factor UbiK family protein -
  LAZ82_RS00360 (LAZ82_00360) - 82290..83072 (+) 783 WP_234295181.1 TorF family putative porin -
  LAZ82_RS00365 (LAZ82_00365) - 83085..83423 (+) 339 WP_006713297.1 P-II family nitrogen regulator -
  LAZ82_RS00370 (LAZ82_00370) - 83440..84972 (+) 1533 WP_234295182.1 ammonium transporter -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 54472.23 Da        Isoelectric Point: 8.9792

>NTDB_id=606377 LAZ82_RS00350 WP_234295180.1 80023..81558(-) (comM) [Herbaspirillum frisingense strain AU14559]
MSLAVLRSRALAGMAAPPVTVEVHLANGLPAFTIVGLPEAEVKEAKDRVRAALQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPSDHLDDYEYAGELSLSGQLRPIRGALAMTCAMQHPGEPDRRQRAFILPAGNADEAALVQQATI
LPAASLLDVCAHFSARDESGRLQRHRGATGAGADGRRPAYPDFSDIKGQLRARRAMEVAAAGGHSILLVGPPGAGKSMLA
TRFAGILPPMSEAQALESAAVQSLAGHFDSARWKQRPYRAPHHTASAVALVGGGGTPRPGEISLAHHGVLFLDEIAEYPR
SVLDVLRQPMESGHIVISRAARQAEFPARFQLVAAMNPCPCGFYADPTGRCRCTPELVKRYQQRLSGPLLDRIDMQLQVA
ALTPTELGAPGQGESSDAIAARVAAAAERQWQRQGMPNSQLSGGAVDRYCDPGAEGAQLLQQAMVRLQWSARAYHRVLRL
ARTIADLAGAPAIQAAHIAEAIQYRRALNTG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=606377 LAZ82_RS00350 WP_234295180.1 80023..81558(-) (comM) [Herbaspirillum frisingense strain AU14559]
ATGAGCCTGGCGGTCTTGCGCAGCCGCGCGCTGGCCGGCATGGCCGCCCCACCGGTGACGGTGGAGGTGCATCTGGCCAA
TGGCCTGCCGGCCTTCACCATCGTCGGTCTTCCCGAAGCCGAAGTGAAGGAAGCCAAGGACCGCGTCCGGGCGGCGCTGC
AGAATGCGCGGTTCGAATTCCCGGCGCGACGCATCACGGTCAACCTGGCGCCCGCCGACCTTCCCAAGGAATCCGGGCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTGGCGGCCTCCGGGCAGATTCCCTCTGACCATCTGGATGACTATGAATACGC
AGGTGAACTGTCGCTGTCGGGCCAGTTGCGGCCGATCCGCGGCGCACTGGCAATGACCTGCGCCATGCAACACCCCGGGG
AGCCGGACCGCCGGCAACGCGCCTTCATCCTGCCGGCCGGCAATGCCGACGAGGCGGCGCTGGTGCAGCAGGCGACCATC
CTTCCGGCCGCGTCGCTGCTGGATGTATGCGCGCATTTCAGCGCCCGCGACGAGAGCGGCCGCCTGCAGCGCCATCGAGG
CGCCACCGGGGCCGGGGCAGATGGCCGGCGCCCGGCCTATCCCGATTTCAGCGATATCAAGGGACAGCTCCGGGCCAGGC
GGGCGATGGAGGTGGCGGCAGCCGGGGGGCACAGCATCCTGCTGGTGGGGCCACCCGGTGCGGGCAAATCGATGCTGGCC
ACGCGTTTTGCCGGCATCCTGCCACCCATGAGCGAGGCCCAGGCGCTGGAGTCGGCGGCGGTGCAATCGCTGGCCGGCCA
CTTCGACAGCGCCCGCTGGAAACAGCGACCCTATCGCGCGCCGCATCACACGGCCTCCGCCGTGGCGCTGGTCGGTGGCG
GTGGCACGCCCCGCCCGGGCGAGATCTCGCTGGCCCATCACGGGGTGCTGTTCCTGGACGAGATCGCGGAATACCCGCGC
AGCGTGCTCGATGTGCTGCGCCAGCCGATGGAGTCGGGTCACATCGTCATTTCACGGGCGGCACGCCAGGCGGAGTTTCC
GGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCCATGTGGCTTCTACGCCGACCCGACAGGTCGCTGCCGCTGCA
CGCCCGAGCTGGTCAAGCGCTACCAGCAACGCCTGTCCGGCCCCCTGCTGGATCGCATCGACATGCAATTGCAGGTGGCC
GCCCTGACGCCCACAGAGCTGGGCGCGCCTGGCCAGGGGGAATCCAGTGACGCCATCGCCGCACGGGTGGCGGCCGCCGC
CGAGCGGCAATGGCAACGCCAGGGCATGCCCAACAGCCAATTGAGCGGCGGCGCGGTGGACCGGTATTGCGACCCCGGCG
CCGAGGGCGCGCAACTGCTGCAGCAGGCCATGGTCCGCCTGCAGTGGTCGGCCCGGGCCTATCACCGCGTGCTGCGGCTG
GCGCGCACCATCGCCGATCTGGCGGGCGCGCCTGCCATCCAGGCGGCGCATATTGCCGAAGCGATCCAGTACCGGCGCGC
CCTCAATACGGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.69

99.217

0.503
  comM Vibrio campbellii strain DS40M4

50.493

99.217

0.501
  comM Legionella pneumophila str. Paris

49.318

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.318

100

0.495
  comM Glaesserella parasuis strain SC1401

49.803

99.413

0.495
  comM Haemophilus influenzae Rd KW20

49.803

99.413

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.93

98.434

0.442