Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABEDC_RS01055 Genome accession   NZ_CP083571
Coordinates   229388..230878 (-) Length   496 a.a.
NCBI ID   WP_004281040.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 228346..229047 229388..230878 flank 341


Gene organization within MGE regions


Location: 228346..230878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01045 (ABEDC_0216) - 228346..229047 (-) 702 WP_004282341.1 IS1 family transposase -
  ABEDC_RS01050 (ABEDC_0217) - 229108..229347 (+) 240 Protein_197 DDE transposase -
  ABEDC_RS01055 (ABEDC_0218) comM 229388..230878 (-) 1491 WP_004281040.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54565.45 Da        Isoelectric Point: 7.2190

>NTDB_id=606216 ABEDC_RS01055 WP_004281040.1 229388..230878(-) (comM) [Acinetobacter lwoffii strain ED9-5a]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEDCTEHLEFIGELALDGQLRPVSGTLSIAIACQSDQHQLILPGPNAQEACQLPDFKVFAANHL
KEVCEHLSQAQRLPQIEASPLNTDHFYKFDLADVKGQLRPRRGLEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
QENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDNRPTE
NSETVRQRVIAAYEIQMQRQNTLNMSLSPKQLEQYAALDQSAQNMLEMAQQKLNLSARGYHRVLRVARTIADLNQSPDIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=606216 ABEDC_RS01055 WP_004281040.1 229388..230878(-) (comM) [Acinetobacter lwoffii strain ED9-5a]
ATGTCTTTTGCTAAAATTTATACGCGAGGCTTGCTGGGCCTGCATGCGCCTTTAATTGAAGTCGAAGTTCATGTCAGTTC
GGGTATGCCTTCACTCACTATAGTGGGGCTTCCCGAAGCAGCGGTACGTGAAAGTAAAGACCGGGTACGCTCTGCCATTT
TGAATAGCGGCTTTCAATTTCCGACCAAACGTCTGACCATTAATCTGGCGCCAGCAGATCTACCGAAAGATGGATCACGT
CTGGATTTACCGATTGCATTAGGCATTTTAGTGGCTTCAGGCCAGCTGCCTGAAGATTGTACTGAGCATCTGGAGTTTAT
TGGCGAGTTGGCCCTCGATGGTCAATTACGTCCTGTCAGCGGCACCTTAAGTATTGCCATTGCCTGTCAAAGTGACCAGC
ATCAACTGATTTTGCCTGGCCCCAATGCACAGGAAGCCTGTCAGCTCCCAGACTTTAAAGTCTTTGCAGCCAATCATTTA
AAAGAAGTGTGTGAACATCTTTCCCAAGCGCAGCGCTTACCGCAAATAGAAGCCAGTCCACTCAATACAGACCATTTTTA
TAAGTTTGATCTGGCGGATGTAAAAGGACAATTACGACCACGGCGTGGCTTGGAAATTGCTGCGGCAGGTGGTCATTCCC
TGCTGTTTCGAGGCCCACCCGGAACAGGCAAGACCTTGCTGGCTTCTCGATTGGCCAGTATTTTGCCGCCCTTAAAGACG
CAGGAAAATCTGGAAGTGGCCAGTATTTATTCGGTGGCGAATGCCAATCACCCTTTTGGACAACGGCCGTTTCGAGCACC
ACACCATACTGCTTCTGCGGTGGCATTGGTCGGTGGCGGCTCACACCCCAAGCCAGGAGAAATTACCCTGGCACATTTAG
GGGTTTTATTTCTGGACGAACTGCCTGAATTCGACCGCAAAGTGCTGGAGGTTCTACGTCAGCCTTTGGAAGCCAAGGAA
ATCGTCATTTCCCGGGCATCACGCCAAATTACCTTTCCGGCTAATTTCCAGTTGGTGGCTGCCATGAATCCATGTCCATG
TGGGTATGCATTCAATCAAGATATCCGCTGCCAATGTTCACCCGAAAGTATTAAACGCTATCAGAACCGGATTTCAGGCC
CGTTGCTGGATCGGATTGATTTGCATATTGATGTACCGCCATTACAAGCGCATGAATTACAGGACAATCGACCTACAGAA
AACTCAGAAACGGTTAGACAACGCGTCATTGCAGCCTATGAAATTCAGATGCAACGGCAAAATACCTTGAATATGAGTTT
GAGTCCAAAGCAGTTAGAGCAATATGCCGCATTAGATCAGTCTGCTCAGAATATGCTTGAAATGGCTCAGCAAAAACTGA
ATTTATCAGCGCGCGGCTATCATCGGGTCTTGCGTGTTGCACGCACCATTGCCGATTTAAATCAAAGTCCAGATATTCAA
AGTCAGCATCTTTCGGAGGCCCTGTCTTATCGCGGGCAGCAGCAGATTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.102

100

0.514
  comM Legionella pneumophila str. Paris

51.008

100

0.51
  comM Legionella pneumophila strain ERS1305867

51.008

100

0.51
  comM Vibrio cholerae strain A1552

50.4

100

0.508
  comM Glaesserella parasuis strain SC1401

49.802

100

0.506
  comM Vibrio campbellii strain DS40M4

49.4

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.525

100

0.484