Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NLL86_RS24685 Genome accession   NZ_CP100660
Coordinates   5362926..5363474 (-) Length   182 a.a.
NCBI ID   WP_103448767.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5357926..5368474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS24665 (NLL86_24665) - 5358412..5359173 (-) 762 WP_254481630.1 SDR family NAD(P)-dependent oxidoreductase -
  NLL86_RS24670 (NLL86_24670) - 5359194..5359979 (-) 786 WP_099814604.1 TSUP family transporter -
  NLL86_RS24675 (NLL86_24675) - 5360009..5361034 (-) 1026 WP_254481631.1 TauD/TfdA family dioxygenase -
  NLL86_RS24680 (NLL86_24680) - 5361459..5362853 (+) 1395 WP_254481632.1 PLP-dependent aminotransferase family protein -
  NLL86_RS24685 (NLL86_24685) ssb 5362926..5363474 (-) 549 WP_103448767.1 single-stranded DNA-binding protein Machinery gene
  NLL86_RS24690 (NLL86_24690) - 5363484..5364878 (-) 1395 WP_254481633.1 MFS transporter -
  NLL86_RS24695 (NLL86_24695) uvrA 5365008..5367842 (+) 2835 WP_254481634.1 excinuclease ABC subunit UvrA Machinery gene
  NLL86_RS24700 (NLL86_24700) bfr 5367915..5368379 (-) 465 WP_016715322.1 bacterioferritin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20261.33 Da        Isoelectric Point: 5.9286

>NTDB_id=606085 NLL86_RS24685 WP_103448767.1 5362926..5363474(-) (ssb) [Pseudomonas fluorescens strain ZL22]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQQQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=606085 NLL86_RS24685 WP_103448767.1 5362926..5363474(-) (ssb) [Pseudomonas fluorescens strain ZL22]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACCGAGATCATCGTTGACATCAACGGCAC
CATGCAGCTCCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAATCAGGGTGGCGGCAACTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCCCCGCCACGCCAGCAGGCCCAGCGCCCGCAGCAGCAACAGCGCCCG
GCGCCGCAGCAGCCAGCACCGCAGCCGGCAGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.577
  ssb Glaesserella parasuis strain SC1401

49.223

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.484
  ssb Neisseria meningitidis MC58

47.027

100

0.478