Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   NLL86_RS24695 Genome accession   NZ_CP100660
Coordinates   5365008..5367842 (+) Length   944 a.a.
NCBI ID   WP_254481634.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5360008..5372842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS24675 (NLL86_24675) - 5360009..5361034 (-) 1026 WP_254481631.1 TauD/TfdA family dioxygenase -
  NLL86_RS24680 (NLL86_24680) - 5361459..5362853 (+) 1395 WP_254481632.1 PLP-dependent aminotransferase family protein -
  NLL86_RS24685 (NLL86_24685) ssb 5362926..5363474 (-) 549 WP_103448767.1 single-stranded DNA-binding protein Machinery gene
  NLL86_RS24690 (NLL86_24690) - 5363484..5364878 (-) 1395 WP_254481633.1 MFS transporter -
  NLL86_RS24695 (NLL86_24695) uvrA 5365008..5367842 (+) 2835 WP_254481634.1 excinuclease ABC subunit UvrA Machinery gene
  NLL86_RS24700 (NLL86_24700) bfr 5367915..5368379 (-) 465 WP_016715322.1 bacterioferritin -
  NLL86_RS24705 (NLL86_24705) - 5368543..5369982 (-) 1440 WP_254481635.1 catalase -
  NLL86_RS24710 (NLL86_24710) rplQ 5370154..5370540 (-) 387 WP_003255451.1 50S ribosomal protein L17 -
  NLL86_RS24715 (NLL86_24715) rpoA 5370583..5371584 (-) 1002 WP_003255452.1 DNA-directed RNA polymerase subunit alpha -
  NLL86_RS24720 (NLL86_24720) rpsD 5371607..5372227 (-) 621 WP_027917844.1 30S ribosomal protein S4 -
  NLL86_RS24725 (NLL86_24725) rpsK 5372243..5372632 (-) 390 WP_003255454.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104305.28 Da        Isoelectric Point: 7.1058

>NTDB_id=606086 NLL86_RS24695 WP_254481634.1 5365008..5367842(+) (uvrA) [Pseudomonas fluorescens strain ZL22]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTISQMVDLVLERPEGSKLMLLAPVVRERKG
EHLAVFDELRAQGFVRARVNGKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEMIFSARFACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLVNSELTLAEGAIRGWDRRNVYYFQML
GSLAAHYGFSLEEPFGELSAEHQKVILQGSGKQSVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFL
GTQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGEASSYFGDLTLTGRRGEIAAKILKEICERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDLGNTVIVVEHDEDAIRLADYVVDIG
PGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRKKIVVPAKRTPRNKKLQLKLKGARGNNLQNVDLEIPIGLLTCVTGV
SGSGKSTLINNTLFPLAATALNGASTLEAAPHTSMDGLQHLDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKNIHEVLEMTIEDARAFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIACGTPEELTKMKQSYTGHYLKPLLERDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=606086 NLL86_RS24695 WP_254481634.1 5365008..5367842(+) (uvrA) [Pseudomonas fluorescens strain ZL22]
GTGGACAAGATCCTGATTCGTGGGGCACGTACCCACAACCTGAAGAACATCGACCTGACCCTGCCGCGGGACAAGCTTAT
CGTGATCACCGGCCTGTCCGGATCCGGCAAGTCGTCCCTGGCGTTCGACACACTCTACGCCGAGGGCCAGCGCCGCTACG
TGGAATCGCTGTCGGCCTATGCCCGGCAATTCCTGTCGATGATGGAAAAGCCCGACGTCGACACGATCGAAGGCCTGTCG
CCGGCGATTTCCATCGAGCAGAAGTCGACATCGCACAACCCAAGGTCGACGGTCGGCACCATCACCGAGATCTACGACTA
CCTGCGCCTGCTGTACGCCCGCGTCGGTACGCCGCGCTGCCCGGACCATGACATCCCACTGGAAGCGCAAACGATCAGCC
AGATGGTCGACTTGGTACTGGAGCGCCCTGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTCGTGCGCGAGCGCAAGGGT
GAGCACCTGGCGGTATTCGACGAGTTGCGCGCCCAGGGCTTCGTGCGTGCGCGGGTCAACGGCAAGCTTTATGAGCTCGA
CGAACTGCCGAAGCTGGACAAGCAGAAGAAGCACAGCATCGATGTGGTAGTGGACCGTTTCAAGGTCCGCGCCGACCTGC
AACAGCGCCTGGCCGAGTCGTTCGAAACCGCGCTGAAGCTGGCCGATGGCATCGCCTTGGTAGCGCCCATGGACGACGAG
CCCGGCGAAGAGATGATCTTCTCCGCGCGCTTCGCCTGCCCGGTGTGCGGCCACGCGATCAGCGAACTGGAGCCGAAGCT
GTTCTCCTTCAACAACCCGGCCGGTGCCTGCCCGACCTGCGATGGCCTTGGGGTGAAGCAGTTCTTCGATACCAAGCGCC
TGGTCAACAGCGAGCTGACCCTGGCCGAAGGCGCGATTCGCGGCTGGGACCGGCGCAACGTGTATTACTTCCAGATGCTC
GGCTCGCTGGCCGCGCATTACGGCTTCAGCCTGGAAGAGCCGTTCGGTGAACTGTCAGCCGAGCACCAGAAGGTGATCCT
GCAAGGCAGCGGCAAGCAGAGCGTCGACTTCAAGTACCTCAACGACCGCGGCGATATCGTCAAGCGCTCGCACCCGTTCG
AAGGCATCGTGCCGAACCTCGAACGCCGCTATCGCGAGACCGAATCGGCCACCGTGCGTGAAGAGCTGGCCAAGTTCCTC
GGCACCCAGCCCTGCCCGGATTGTCGTGGCACCCGCCTGCGCCGCGAAGCCCGCCACGTGTGGGTTGGCGAGAAGACCCT
GCCGGCAGTGACCAACCTGCCGATCGGTGAGGCCAGCAGCTATTTCGGTGACCTGACCCTGACCGGCCGCCGCGGCGAGA
TTGCGGCAAAGATCCTCAAGGAGATCTGCGAACGCCTGCAGTTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTCGAT
CGCAGTGCCGACACGCTGTCTGGCGGTGAGGCCCAGCGTATCCGCCTGGCCAGCCAGATTGGTGCCGGCCTGGTCGGAGT
GATGTACATCCTTGACGAACCGTCCATCGGTCTTCATCAACGGGACAACGACCGCCTGCTGGCCACCCTCAACCACCTGC
GCGACCTGGGTAACACGGTGATCGTGGTGGAGCACGACGAGGACGCCATACGTCTGGCCGACTACGTGGTGGACATCGGC
CCAGGTGCCGGCGTGCACGGTGGCCAGATCGTTGCTGAGGGCTCGCCACAGGAGGTCATGGACCACCCAGATTCGCTGAC
CGGCAAGTACCTGTCCGGCCGCAAGAAGATCGTCGTGCCCGCCAAGCGCACCCCGCGCAACAAAAAACTGCAGCTCAAGC
TCAAGGGCGCACGCGGCAACAACTTGCAGAACGTCGACCTTGAAATCCCGATCGGCCTGCTGACCTGCGTGACCGGCGTG
TCCGGCTCGGGCAAGTCGACGCTTATCAACAACACCCTGTTCCCCCTCGCCGCCACTGCCCTCAATGGTGCAAGCACCCT
GGAAGCTGCGCCGCACACCAGCATGGACGGCCTGCAGCACCTGGACAAGGTGGTGGATATCGACCAGAGCCCGATCGGCC
GCACACCGCGCTCGAACCCGGCTACCTACACCGGTATCTTCACGCCGATTCGCGAACTGTTCTCCGGCGTGCCGGAATCG
CGCTCGCGCGGCTACGGCCCTGGGCGCTTCTCGTTCAACGTCAAGGGTGGCCGTTGCGAGGCCTGCCAGGGCGATGGCCT
GATCAAGGTCGAGATGCACTTCCTGCCGGACATCTACGTGCCCTGCGACGTTTGCAAAAGCAAGCGCTACAACCGGGAAA
CCCTGGAGATCAAGTACAAGGGCAAGAACATCCACGAAGTGCTGGAAATGACCATCGAGGATGCCCGTGCGTTCTTCGAT
GCGGTACCGGCGCTGGCGCGCAAGCTGCAGACGCTGATGGACGTGGGTCTTTCGTACATCAAGCTGGGGCAATCGGCGAC
CACCCTGTCCGGTGGCGAGGCGCAACGGGTGAAGCTGTCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCTTGTACA
TCCTCGACGAGCCGACCACCGGCCTGCACTTCGCCGACATCCAGCAGCTGCTGGACGTGCTGCACCGCCTGCGTGACCAC
GGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACTGCCGACTGGCTGGTGGACCTGGGGCCGGAAGG
CGGCTCCAAGGGCGGGCAGATCATTGCCTGCGGTACCCCGGAAGAGCTGACCAAGATGAAACAGTCATATACCGGGCACT
ACCTCAAGCCGCTGCTGGAGCGTGACCGGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.717

100

0.578
  uvrA Streptococcus pneumoniae TIGR4

57.717

100

0.578
  uvrA Streptococcus pneumoniae D39

57.717

100

0.578