Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6V71_RS19595 Genome accession   NZ_CP083438
Coordinates   2270746..2271264 (+) Length   172 a.a.
NCBI ID   WP_174781169.1    Uniprot ID   -
Organism   Cupriavidus gilardii strain NOV2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2265746..2276264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6V71_RS19585 (K6V71_19490) uvrA 2265914..2268811 (-) 2898 WP_174781168.1 excinuclease ABC subunit UvrA -
  K6V71_RS19590 (K6V71_19495) - 2269284..2270561 (+) 1278 WP_053821041.1 MFS transporter -
  K6V71_RS19595 (K6V71_19500) ssb 2270746..2271264 (+) 519 WP_174781169.1 single-stranded DNA-binding protein Machinery gene
  K6V71_RS19600 (K6V71_19505) - 2271482..2272699 (+) 1218 WP_260730696.1 acyl-CoA dehydrogenase family protein -
  K6V71_RS19605 (K6V71_19510) - 2272729..2274069 (+) 1341 WP_260730695.1 LLM class flavin-dependent oxidoreductase -
  K6V71_RS19610 (K6V71_19515) - 2274212..2275795 (+) 1584 WP_260730694.1 TerC family protein -
  K6V71_RS19615 (K6V71_19520) - 2275862..2276236 (-) 375 WP_260730693.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18275.02 Da        Isoelectric Point: 5.9518

>NTDB_id=605837 K6V71_RS19595 WP_174781169.1 2270746..2271264(+) (ssb) [Cupriavidus gilardii strain NOV2-1]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGDMKELTEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWQDQSGQDKYSTEIVAEQMQMLGSRQGGGGGGDEGGGYARESSGGGYGGGGRGAQGGGGGNQGGGARRPQQSPS
NGFEDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=605837 K6V71_RS19595 WP_174781169.1 2270746..2271264(+) (ssb) [Cupriavidus gilardii strain NOV2-1]
ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCGGACCCCGAAACGCGCTATATGCCCAGTGGCGATGC
CGTGACCAATATCCGGCTGGCCACCACGGACCGCTACAAGGACAAGCAGAGCGGCGACATGAAGGAGCTGACCGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATATCGAAGGC
CGCATCCGTACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACAGCACCGAAATCGTCGCTGAACAAATGCAGAT
GCTCGGCTCGCGCCAGGGCGGTGGTGGCGGCGGCGACGAAGGCGGCGGCTACGCCCGCGAATCGTCGGGCGGCGGCTATG
GTGGCGGTGGCCGCGGCGCCCAAGGCGGTGGCGGTGGCAACCAGGGCGGCGGCGCACGCCGGCCGCAGCAGTCGCCGTCG
AATGGCTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.933

100

0.558
  ssb Glaesserella parasuis strain SC1401

51.667

100

0.541
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.465
  ssb Neisseria meningitidis MC58

45.402

100

0.459
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.413

100

0.39