Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K9O83_RS21650 Genome accession   NZ_CP083403
Coordinates   4555434..4556954 (+) Length   506 a.a.
NCBI ID   WP_126818768.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain XL95     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4550434..4561954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O83_RS21625 (K9O83_21565) ilvE 4552000..4552929 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  K9O83_RS21630 (K9O83_21570) ilvM 4552948..4553211 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  K9O83_RS21635 (K9O83_21575) ilvG 4553208..4554854 (-) 1647 WP_224066087.1 acetolactate synthase 2 catalytic subunit -
  K9O83_RS21640 (K9O83_21580) ilvX 4554857..4554907 (-) 51 WP_166792073.1 peptide IlvX -
  K9O83_RS21645 (K9O83_21585) ilvL 4554994..4555092 (-) 99 WP_001311244.1 ilv operon leader peptide -
  K9O83_RS21650 (K9O83_21590) comM 4555434..4556954 (+) 1521 WP_126818768.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K9O83_RS21655 (K9O83_21595) - 4556982..4557320 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  K9O83_RS21660 (K9O83_21600) hdfR 4557439..4558260 (+) 822 WP_028014823.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54994.00 Da        Isoelectric Point: 7.3596

>NTDB_id=605660 K9O83_RS21650 WP_126818768.1 4555434..4556954(+) (comM) [Enterobacter bugandensis strain XL95]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKLSYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTDRLG
ESSAHVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNVEDAAWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ARKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=605660 K9O83_RS21650 WP_126818768.1 4555434..4556954(+) (comM) [Enterobacter bugandensis strain XL95]
ATGTCACTGTCAGTTGTTTATACGCGAGCAGCTCTCGGGGTAAAGGCTCCGCTTATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACCACGGTTAAAGAGGCCAGGGACCGCGTTCGTAGCGCAATAA
TAAACAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTTGCTCCCGCTGACCTGCCCAAAGAGGGTGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCACTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCGTTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGTCTCATCGCCGGGCATCTT
CAGGAAGTATGCGCCTGGCTGGAAGGCCGCCATGAACTGTCCGAGCCGGAAGAGTGCGACGAGGCTATAGCGGATGCGCC
AGAAGACCTCAGCGAGATCATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCAGCGGGTGGGCACAATCTCC
TGCTGATTGGCCCGCCGGGTACGGGCAAAACCATGCTGGCAAGCAGGCTAAGCGGATTGCTCCCGCCGCTTAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATCTATAGCCTGATCGGTTCGACGTCGTTGCACAAACAGTGGCGTCGACGTCCCTTTCG
TTCGCCGCATCATAGCGCGTCACTGACGGCAATGGTCGGTGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGTTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGGGAGCCCATTGAATCC
GGTGAGATACATATTTCACGCACGCGAGCCAAATTAAGCTATCCCGCCCGTTTTCAGCTCGTGGCGGCGATGAACCCCAG
TCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCTGGCC
CGTTTCTTGACCGTTTCGATTTATCACTTGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGATAGACTGGGT
GAAAGCTCCGCGCATGTTCGCGAGCGGGTTATCGCGGCACAGGCGAGACAGTATGCCCGTCAAAACAGGCTGAATGCACG
ACTGGATAATGCAGGGATCCGACAGTTTTGTTCTCTTAACGTTGAAGATGCGGCTTGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTTTCCATACGTGCGTGGCAGCGCTTGTTAAAAGTAGCCAGAACCATTGCGGACGTGGAGGGCTGTACTGATATT
GCGAGGAAACACTTGCAGGAAGCGCTGAGCTATCGGGCGATCGATCGTTTGCTTTTGCATCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443