Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LAJ50_RS01865 Genome accession   NZ_CP083376
Coordinates   425263..426777 (-) Length   504 a.a.
NCBI ID   WP_130551093.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. X-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 420263..431777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ50_RS01850 (LAJ50_01850) aceA 421946..423277 (+) 1332 WP_138652648.1 isocitrate lyase -
  LAJ50_RS01855 (LAJ50_01855) - 423531..423902 (+) 372 WP_130551094.1 hypothetical protein -
  LAJ50_RS01860 (LAJ50_01860) - 424119..425093 (+) 975 WP_224096434.1 DUF2884 family protein -
  LAJ50_RS01865 (LAJ50_01865) comM 425263..426777 (-) 1515 WP_130551093.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LAJ50_RS01870 (LAJ50_01870) - 426813..427067 (-) 255 WP_130535466.1 accessory factor UbiK family protein -
  LAJ50_RS01875 (LAJ50_01875) - 427413..428129 (-) 717 WP_205961524.1 DUF998 domain-containing protein -
  LAJ50_RS01880 (LAJ50_01880) - 428223..429299 (-) 1077 WP_171044577.1 AraC family transcriptional regulator -
  LAJ50_RS01885 (LAJ50_01885) - 429396..430877 (+) 1482 WP_138652644.1 NAD(P)/FAD-dependent oxidoreductase -
  LAJ50_RS01890 (LAJ50_01890) - 430889..431647 (+) 759 WP_171044576.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53404.18 Da        Isoelectric Point: 8.6849

>NTDB_id=605441 LAJ50_RS01865 WP_130551093.1 425263..426777(-) (comM) [Pseudoxanthomonas sp. X-1]
MSLALVHSRARCGVQAPGVQVEVHLSGGLPSTHIVGLPEAAVRESRDRVRAALLCAQFEFPARRITVNLAPADLPKDGGR
FDLPIALGLLAASGQIDRQALADWEFVGELGLTGELRSIDGVLPAVLAARDAGRRLIVPAGNGAEAALVATGQACTARTL
LEVCAMLRGARAPTAAVAEPVTPWPMPDLRDVRGQLHARRALEVAAAGGHHLLFVGSPGCGKTLLASRLPGLLPEASEDE
ALESAVIASVSGRGLDPTRWRQRPFRSPHHTASAVALVGGGALPRPGEVSLAHHGVLFLDELTEWDRRALEVLREPLESG
TVTVARAARSAEFPARFQLVAAMNPCPCGWAGDASGRCQCTTERIARYRGRISGPLLDRIDLQVDVARLPPQALRPDAPA
GEDSTTVRARVAAARARQLRRAGVLNARLDQAQTLAHCRLTPPDQGLLERAIDQLQLSARAMQRTLRVARTIADLAGSEP
IATAHLTEALSYRQQATAPQAHAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=605441 LAJ50_RS01865 WP_130551093.1 425263..426777(-) (comM) [Pseudoxanthomonas sp. X-1]
ATGAGTCTGGCCCTGGTCCACAGCCGGGCGCGCTGCGGCGTGCAAGCGCCCGGCGTGCAGGTCGAAGTCCACCTCTCCGG
CGGCCTGCCGTCCACGCACATCGTCGGCCTGCCCGAGGCGGCCGTGCGCGAGAGCCGCGACCGGGTGCGCGCGGCGCTGC
TGTGCGCGCAGTTCGAGTTCCCCGCACGCCGCATCACCGTCAACCTGGCCCCGGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGCCGATCGCACTGGGCCTGCTGGCGGCCAGCGGCCAGATCGACCGCCAGGCCCTGGCCGACTGGGAGTTCGT
CGGCGAACTGGGCCTGACCGGCGAGCTGCGCAGCATCGATGGCGTGCTGCCGGCGGTGCTGGCCGCGCGCGACGCGGGCC
GGCGCCTGATCGTGCCGGCGGGCAATGGCGCCGAGGCCGCGCTGGTGGCCACCGGCCAGGCCTGCACCGCGCGCACCCTG
CTGGAGGTCTGCGCCATGCTGCGCGGTGCACGCGCGCCGACAGCGGCCGTCGCCGAACCGGTCACGCCCTGGCCGATGCC
GGACCTGCGCGACGTGCGCGGCCAGCTGCACGCCCGGCGCGCGCTGGAAGTCGCCGCGGCCGGTGGCCACCACCTGCTGT
TCGTCGGTTCGCCCGGCTGCGGCAAAACCTTGCTGGCCTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGAGGACGAA
GCGCTGGAGAGCGCCGTCATCGCCTCGGTCAGCGGCCGCGGCCTGGATCCGACGCGCTGGCGCCAGCGTCCGTTCCGCAG
TCCGCACCACACCGCCAGCGCGGTGGCGCTGGTCGGCGGCGGTGCGCTGCCGCGGCCCGGCGAGGTGTCGCTGGCGCACC
ACGGCGTGCTGTTCCTCGATGAGCTGACCGAATGGGACCGGCGCGCGTTGGAGGTGCTGCGCGAGCCGCTGGAGTCGGGC
ACGGTCACCGTCGCGCGCGCGGCGCGCAGCGCCGAGTTTCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAATCCCTGTCC
GTGCGGCTGGGCCGGCGATGCCAGCGGTCGCTGTCAGTGCACCACCGAGCGCATCGCCCGCTACCGCGGCCGCATCTCCG
GCCCGCTGCTGGACCGGATCGATCTGCAGGTCGATGTCGCGCGCCTGCCCCCGCAGGCGCTGCGCCCGGATGCACCGGCC
GGCGAGGACAGCACGACCGTGCGCGCCCGCGTCGCCGCCGCGCGGGCGCGGCAGCTGCGACGCGCCGGGGTGCTCAATGC
GCGCCTGGACCAGGCCCAGACCCTCGCCCATTGCCGGCTCACGCCGCCCGACCAAGGCCTGCTGGAGCGCGCAATCGACC
AGCTGCAGCTGTCCGCGCGCGCCATGCAGCGCACCCTGCGCGTGGCCCGCACGATCGCCGATCTGGCAGGAAGCGAACCC
ATCGCCACCGCGCACCTGACCGAGGCCCTGAGCTATCGGCAGCAGGCGACCGCGCCGCAGGCCCATGCGGCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.535

98.214

0.526
  comM Glaesserella parasuis strain SC1401

52.6

99.206

0.522
  comM Vibrio campbellii strain DS40M4

52.705

99.008

0.522
  comM Haemophilus influenzae Rd KW20

52.705

99.008

0.522
  comM Legionella pneumophila str. Paris

50

100

0.5
  comM Legionella pneumophila strain ERS1305867

50

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.254

100

0.433