Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K7G89_RS08820 Genome accession   NZ_CP083262
Coordinates   1860062..1861591 (+) Length   509 a.a.
NCBI ID   WP_191135291.1    Uniprot ID   -
Organism   Pasteurella canis strain HL268     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1855062..1866591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G89_RS08795 (K7G89_001751) rsmD 1855554..1856156 (+) 603 WP_223667641.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K7G89_RS08800 (K7G89_001752) - 1856168..1857682 (+) 1515 WP_223667643.1 surface lipoprotein assembly modifier -
  K7G89_RS08805 (K7G89_001753) trmL 1857808..1858284 (+) 477 WP_046339917.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  K7G89_RS08810 (K7G89_001754) - 1858349..1859221 (-) 873 WP_046339916.1 DUF535 family protein -
  K7G89_RS08815 (K7G89_001755) yihA 1859332..1859952 (+) 621 WP_046339915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K7G89_RS08820 (K7G89_001756) comM 1860062..1861591 (+) 1530 WP_191135291.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K7G89_RS08825 (K7G89_001757) - 1861683..1862522 (-) 840 WP_223667645.1 divergent polysaccharide deacetylase family protein -
  K7G89_RS08830 (K7G89_001758) envC 1862519..1863748 (-) 1230 WP_223667646.1 murein hydrolase activator EnvC -
  K7G89_RS08835 (K7G89_001759) - 1863932..1864615 (+) 684 WP_049214954.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 56072.47 Da        Isoelectric Point: 9.9871

>NTDB_id=605196 K7G89_RS08820 WP_191135291.1 1860062..1861591(+) (comM) [Pasteurella canis strain HL268]
MSLAIVYSRASIGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGMLAAAGQIEAQKLQQFEFVGELALTGELRGVQGVIPAILAAQKAKRKLIIASQNANEASLVSNQQTYFANNL
LDVVNFLNDHVNLPLASTLTTQSEVNFSVKNPLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTMLLP
DMTDQEAIETAAVTSLVHNELNFHNWKQRPFRTPHHSASIPALVGGGTIPKPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGSIIISRANAKIEFPARFQLVAAMNPSPTGHYQGPHNRATPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQN
NHSDRGETSTQVREKVLKAREIQLARAGKINTYLTSKEIERDCKLQNKDALFLENTLTKLGLSVRAYHRILKVARTIADL
NNEMQINQNHLAEALSYRAMDRLLQKLSQ

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=605196 K7G89_RS08820 WP_191135291.1 1860062..1861591(+) (comM) [Pasteurella canis strain HL268]
ATGTCTCTTGCTATTGTATATAGTCGTGCTTCTATTGGTGTACAAGCCCCTCTAGTAACAATTGAAGTACATTTTAGCAA
TGGTAAACCACAATTTAATTTAGTTGGTTTACCAGAAAAAACCGTGAAAGAAGCACAAGATCGAGTACGTAGTGCATTAT
TAAATGCTCAATTCAAATATCCTGCCAAGCGCATTACCGTTAATCTTGCACCAGCCGACTTACCCAAAGAAGGAGGGCGT
TTTGATTTACCTATTGCTCTAGGTATGCTCGCAGCAGCAGGACAAATAGAAGCACAAAAACTTCAGCAATTCGAGTTTGT
TGGTGAATTAGCACTTACTGGTGAACTACGTGGTGTACAAGGTGTTATTCCAGCCATTCTTGCTGCGCAAAAAGCAAAGC
GAAAGTTAATTATAGCCAGCCAAAATGCCAATGAAGCAAGCCTAGTTTCAAACCAGCAAACTTATTTTGCGAATAATTTA
TTAGATGTTGTGAACTTTTTAAACGATCACGTCAACTTGCCTCTAGCTTCAACATTGACTACACAAAGTGAAGTTAATTT
TTCCGTAAAAAATCCATTGGATTTAACTGATATTATTGGTCAACAACATGCTAAACGAGCCTTAACTATTGCTGCAGCAG
GACAACATAATTTACTCTTTTTGGGTCCACCAGGTACTGGAAAAACGATGTTAGCCAGTCGCTTAACCATGCTACTGCCC
GATATGACAGATCAAGAAGCAATTGAAACAGCAGCAGTAACTAGTTTGGTACATAATGAGTTAAATTTTCATAATTGGAA
ACAACGTCCCTTTCGTACGCCCCATCATAGTGCATCCATTCCTGCTTTAGTTGGCGGTGGAACGATCCCTAAACCAGGAG
AAATCTCACTTGCTCATAATGGTGTTCTTTTTTTAGATGAGCTACCTGAATTTGACCGTAAAGTATTAGATGCATTACGC
CAACCATTAGAAAGTGGCAGTATCATTATTTCTCGTGCTAATGCAAAAATTGAATTTCCTGCACGTTTTCAACTAGTTGC
GGCAATGAACCCTAGTCCAACAGGACATTATCAAGGTCCCCATAATCGTGCCACACCACAACAAGTTATGCGATACTTAA
ACCGTCTTTCTGGACCATTTTTGGATCGTTTTGACTTATCTATTGAAGTCCCTTTATTACCACAAGGTACATTACAAAAT
AACCACAGTGATCGTGGTGAAACCAGTACTCAAGTACGTGAAAAAGTATTAAAGGCTCGAGAAATTCAACTCGCTCGAGC
TGGCAAAATTAACACATATTTAACCAGTAAAGAAATTGAACGAGATTGTAAACTTCAAAATAAAGACGCATTATTTTTAG
AAAATACACTAACTAAATTAGGACTATCAGTGCGTGCTTATCATCGTATTTTAAAAGTCGCACGCACAATTGCTGATCTC
AATAATGAAATGCAAATAAATCAAAATCATTTAGCCGAAGCGCTCAGTTATCGAGCAATGGATAGGTTATTACAAAAATT
ATCACAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.646

99.804

0.845
  comM Glaesserella parasuis strain SC1401

76.667

100

0.768
  comM Vibrio cholerae strain A1552

64.961

99.804

0.648
  comM Vibrio campbellii strain DS40M4

64.37

99.804

0.642
  comM Legionella pneumophila str. Paris

51.984

99.018

0.515
  comM Legionella pneumophila strain ERS1305867

51.984

99.018

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.899

100

0.475