Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NLY76_RS00755 Genome accession   NZ_CP100430
Coordinates   122510..122917 (+) Length   135 a.a.
NCBI ID   WP_044770160.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117510..127917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS00730 (NLY76_00730) - 118911..119276 (+) 366 WP_024386552.1 DUF1033 family protein -
  NLY76_RS00735 (NLY76_00735) - 119311..120261 (-) 951 WP_044770155.1 S66 peptidase family protein -
  NLY76_RS00740 (NLY76_00740) comGA 120347..121297 (+) 951 WP_044770156.1 competence type IV pilus ATPase ComGA Machinery gene
  NLY76_RS00745 (NLY76_00745) comGB 121209..122246 (+) 1038 WP_044770157.1 competence type IV pilus assembly protein ComGB Machinery gene
  NLY76_RS00750 (NLY76_00750) comGC 122248..122529 (+) 282 WP_044770158.1 competence type IV pilus major pilin ComGC Machinery gene
  NLY76_RS00755 (NLY76_00755) comGD 122510..122917 (+) 408 WP_044770160.1 competence type IV pilus minor pilin ComGD Machinery gene
  NLY76_RS00760 (NLY76_00760) comGE 122889..123182 (+) 294 WP_024401507.1 competence type IV pilus minor pilin ComGE Machinery gene
  NLY76_RS00765 (NLY76_00765) comGF/cglF 123169..123603 (+) 435 WP_052833555.1 competence type IV pilus minor pilin ComGF Machinery gene
  NLY76_RS00770 (NLY76_00770) comGG 123581..123991 (+) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  NLY76_RS00775 (NLY76_00775) comGH 124048..125001 (+) 954 WP_014637318.1 class I SAM-dependent methyltransferase Machinery gene
  NLY76_RS00780 (NLY76_00780) - 125051..126238 (+) 1188 WP_014637319.1 acetate kinase -
  NLY76_RS00785 (NLY76_00785) - 126553..127104 (+) 552 WP_044674513.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15281.47 Da        Isoelectric Point: 6.9826

>NTDB_id=604975 NLY76_RS00755 WP_044770160.1 122510..122917(+) (comGD) [Streptococcus suis strain LSS42]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQAAFQSVQEEIFLWEFEAIYKDSQKLAASSHKKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEEKTIQFEEDGGNSSLTKICFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=604975 NLY76_RS00755 WP_044770160.1 122510..122917(+) (comGD) [Streptococcus suis strain LSS42]
ATGCTACGGCGAAAAAATAAGGCTTTCACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCAGTTTC
TTTGTCGGGAACGGTGCAAGCAGCCTTTCAGTCAGTTCAAGAAGAGATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACAAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTGCCCAGAAACGTAGAGGTCTTAGAGGAGAAAACTATTCAGTTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTTGTTTTCGCCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.819

94.074

0.459
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae R6

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae TIGR4

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae D39

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.186

95.556

0.422
  comGD/cglD Streptococcus mitis SK321

43.411

95.556

0.415
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363