Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K8Z39_RS04630 | Genome accession | NZ_CP083085 |
| Coordinates | 858399..859478 (+) | Length | 359 a.a. |
| NCBI ID | WP_021728000.1 | Uniprot ID | - |
| Organism | Bacillus thuringiensis strain B401 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 824588..866342 | 858399..859478 | within | 0 |
Gene organization within MGE regions
Location: 824588..866342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8Z39_RS04385 (K8Z39_04380) | sufU | 824588..825019 (+) | 432 | WP_000009523.1 | Fe-S cluster assembly sulfur transfer protein SufU | - |
| K8Z39_RS04390 (K8Z39_04385) | sufB | 825068..826465 (+) | 1398 | WP_001118827.1 | Fe-S cluster assembly protein SufB | - |
| K8Z39_RS04395 (K8Z39_04390) | - | 826532..827575 (-) | 1044 | WP_021727740.1 | tyrosine-type recombinase/integrase | - |
| K8Z39_RS04400 (K8Z39_04395) | - | 827663..828289 (-) | 627 | WP_021727741.1 | XRE family transcriptional regulator | - |
| K8Z39_RS04405 (K8Z39_04400) | - | 828454..828699 (+) | 246 | WP_021727742.1 | helix-turn-helix transcriptional regulator | - |
| K8Z39_RS04410 (K8Z39_04405) | - | 828726..828929 (+) | 204 | WP_021727743.1 | hypothetical protein | - |
| K8Z39_RS04415 (K8Z39_04410) | - | 828926..829093 (+) | 168 | WP_023901215.1 | hypothetical protein | - |
| K8Z39_RS04420 (K8Z39_04415) | - | 829094..829321 (+) | 228 | WP_021727744.1 | hypothetical protein | - |
| K8Z39_RS04425 (K8Z39_04420) | - | 829322..829549 (+) | 228 | WP_021727745.1 | hypothetical protein | - |
| K8Z39_RS04430 (K8Z39_04425) | - | 829568..829918 (+) | 351 | WP_021727746.1 | hypothetical protein | - |
| K8Z39_RS04435 (K8Z39_04430) | - | 829943..830587 (+) | 645 | WP_016097904.1 | sigma-70 family RNA polymerase sigma factor | - |
| K8Z39_RS04440 (K8Z39_04435) | - | 830648..830803 (+) | 156 | WP_021727747.1 | hypothetical protein | - |
| K8Z39_RS04445 (K8Z39_04440) | - | 830822..831019 (+) | 198 | WP_001262629.1 | hypothetical protein | - |
| K8Z39_RS04450 (K8Z39_04445) | - | 831016..831366 (+) | 351 | WP_021727748.1 | hypothetical protein | - |
| K8Z39_RS04455 (K8Z39_04450) | - | 831366..831668 (+) | 303 | WP_021727749.1 | hypothetical protein | - |
| K8Z39_RS04460 (K8Z39_04455) | - | 831631..831831 (+) | 201 | WP_023901216.1 | hypothetical protein | - |
| K8Z39_RS04465 (K8Z39_04460) | - | 831833..832024 (+) | 192 | WP_021727751.1 | hypothetical protein | - |
| K8Z39_RS04470 (K8Z39_04465) | - | 832030..832701 (+) | 672 | WP_021727752.1 | AAA family ATPase | - |
| K8Z39_RS04475 (K8Z39_04470) | - | 832730..833188 (+) | 459 | WP_021727753.1 | DUF669 domain-containing protein | - |
| K8Z39_RS04480 (K8Z39_04475) | - | 833261..833773 (+) | 513 | WP_021727754.1 | helix-turn-helix domain-containing protein | - |
| K8Z39_RS04485 (K8Z39_04480) | - | 833793..836147 (+) | 2355 | WP_021727755.1 | phage/plasmid primase, P4 family | - |
| K8Z39_RS04490 (K8Z39_04485) | - | 836425..836664 (+) | 240 | WP_021727756.1 | hypothetical protein | - |
| K8Z39_RS04495 (K8Z39_04490) | - | 836652..837080 (+) | 429 | WP_021727757.1 | hypothetical protein | - |
| K8Z39_RS04500 (K8Z39_04495) | - | 837083..837445 (+) | 363 | WP_023901218.1 | YopX family protein | - |
| K8Z39_RS04505 (K8Z39_04500) | - | 837442..837981 (+) | 540 | WP_021727759.1 | ERCC4 domain-containing protein | - |
| K8Z39_RS04510 (K8Z39_04505) | - | 838054..838491 (+) | 438 | WP_021727760.1 | hypothetical protein | - |
| K8Z39_RS04515 (K8Z39_04510) | - | 838551..838841 (+) | 291 | WP_021727761.1 | hypothetical protein | - |
| K8Z39_RS04520 (K8Z39_04515) | - | 839021..839416 (+) | 396 | WP_000460730.1 | DUF1492 domain-containing protein | - |
| K8Z39_RS04525 (K8Z39_04520) | - | 839545..839826 (+) | 282 | WP_021727762.1 | hypothetical protein | - |
| K8Z39_RS04530 (K8Z39_04525) | - | 839823..840188 (+) | 366 | WP_021727763.1 | HNH endonuclease signature motif containing protein | - |
| K8Z39_RS04535 (K8Z39_04530) | - | 840308..840742 (+) | 435 | WP_021727764.1 | P27 family phage terminase small subunit | - |
| K8Z39_RS04540 (K8Z39_04535) | - | 840739..842463 (+) | 1725 | WP_021727765.1 | terminase TerL endonuclease subunit | - |
| K8Z39_RS04545 (K8Z39_04540) | - | 842568..843773 (+) | 1206 | WP_021727766.1 | phage portal protein | - |
| K8Z39_RS04550 (K8Z39_04545) | - | 843742..844320 (+) | 579 | WP_001140506.1 | HK97 family phage prohead protease | - |
| K8Z39_RS04555 (K8Z39_04550) | - | 844322..845650 (+) | 1329 | WP_021727767.1 | phage major capsid protein | - |
| K8Z39_RS04560 (K8Z39_04555) | - | 845652..845912 (+) | 261 | WP_000343863.1 | head-tail connector protein | - |
| K8Z39_RS04565 (K8Z39_04560) | - | 845890..846222 (+) | 333 | WP_001126094.1 | hypothetical protein | - |
| K8Z39_RS04570 (K8Z39_04565) | - | 846212..846541 (+) | 330 | WP_021727768.1 | hypothetical protein | - |
| K8Z39_RS04575 (K8Z39_04570) | - | 846541..846918 (+) | 378 | WP_021727769.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| K8Z39_RS04580 (K8Z39_04575) | - | 846930..847565 (+) | 636 | WP_042991589.1 | major tail protein | - |
| K8Z39_RS04585 (K8Z39_04580) | - | 847577..847963 (+) | 387 | WP_000113340.1 | hypothetical protein | - |
| K8Z39_RS04590 (K8Z39_04585) | - | 848002..848190 (+) | 189 | WP_006927278.1 | hypothetical protein | - |
| K8Z39_RS04595 (K8Z39_04590) | - | 848207..852085 (+) | 3879 | WP_042991588.1 | phage tail tape measure protein | - |
| K8Z39_RS04600 (K8Z39_04595) | - | 852087..852770 (+) | 684 | WP_021728056.1 | phage tail domain-containing protein | - |
| K8Z39_RS04605 (K8Z39_04600) | - | 852767..855109 (+) | 2343 | WP_021728057.1 | phage tail spike protein | - |
| K8Z39_RS04610 (K8Z39_04605) | - | 855124..856404 (+) | 1281 | WP_021728058.1 | BppU family phage baseplate upper protein | - |
| K8Z39_RS04615 (K8Z39_04610) | - | 856467..856697 (+) | 231 | Protein_862 | BhlA/UviB family holin-like peptide | - |
| K8Z39_RS04620 (K8Z39_04615) | - | 856694..857746 (+) | 1053 | WP_042991587.1 | N-acetylmuramoyl-L-alanine amidase | - |
| K8Z39_RS04625 (K8Z39_04620) | - | 857927..858256 (-) | 330 | WP_021727999.1 | hypothetical protein | - |
| K8Z39_RS04630 (K8Z39_04625) | recA | 858399..859478 (+) | 1080 | WP_021728000.1 | recombinase RecA | Machinery gene |
| K8Z39_RS04635 (K8Z39_04630) | - | 859564..860397 (-) | 834 | WP_021728001.1 | hypothetical protein | - |
| K8Z39_RS04640 (K8Z39_04635) | - | 860969..861265 (+) | 297 | WP_000516529.1 | transposase | - |
| K8Z39_RS04645 (K8Z39_04640) | - | 861274..862155 (+) | 882 | WP_000446736.1 | IS3 family transposase | - |
| K8Z39_RS04650 (K8Z39_04645) | - | 862740..864131 (+) | 1392 | WP_071686394.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase | - |
| K8Z39_RS04655 (K8Z39_04650) | - | 864197..864499 (+) | 303 | WP_000248466.1 | DUF1805 domain-containing protein | - |
| K8Z39_RS04660 (K8Z39_04655) | yunB | 864554..865285 (+) | 732 | WP_000021802.1 | sporulation protein YunB | - |
| K8Z39_RS04665 (K8Z39_04660) | - | 865359..866342 (-) | 984 | WP_000944665.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 38666.84 Da Isoelectric Point: 4.8628
>NTDB_id=604569 K8Z39_RS04630 WP_021728000.1 858399..859478(+) (recA) [Bacillus thuringiensis strain B401]
MAATENTTKGKEKALEEALKKIVKEFGTGAIMKLGERPNQKVSVVSSGSVGLDNALGVGGYPKGRITEIFGPESSGKTTI
ALHAIAEAQKEGGTAAFIDAEHALDPSYAQKLGVNIDELLMSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEI
DGDMGDSHVGLQARLMGQAMRKISGAISKNGVVAIFLNQIREKVGVSFGSPETTPGGRALKFYSTIRLDVRRGEQLKGKE
SDVLGNKTKVKVVKNKVAPPFKNIDFDILYGEGISLEGELIDIGVDLDIVQKSGAWYSYQEERLGQGRDNAKQFLKENEN
ISNSVRNEIYEYYSPKEDSVVVKEGLINENEPITLKESE
MAATENTTKGKEKALEEALKKIVKEFGTGAIMKLGERPNQKVSVVSSGSVGLDNALGVGGYPKGRITEIFGPESSGKTTI
ALHAIAEAQKEGGTAAFIDAEHALDPSYAQKLGVNIDELLMSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEI
DGDMGDSHVGLQARLMGQAMRKISGAISKNGVVAIFLNQIREKVGVSFGSPETTPGGRALKFYSTIRLDVRRGEQLKGKE
SDVLGNKTKVKVVKNKVAPPFKNIDFDILYGEGISLEGELIDIGVDLDIVQKSGAWYSYQEERLGQGRDNAKQFLKENEN
ISNSVRNEIYEYYSPKEDSVVVKEGLINENEPITLKESE
Nucleotide
Download Length: 1080 bp
>NTDB_id=604569 K8Z39_RS04630 WP_021728000.1 858399..859478(+) (recA) [Bacillus thuringiensis strain B401]
ATGGCAGCAACTGAAAATACAACTAAAGGAAAAGAGAAAGCATTAGAAGAGGCTCTGAAGAAAATCGTAAAAGAATTTGG
TACAGGGGCTATTATGAAACTGGGTGAGCGACCTAATCAAAAAGTATCTGTCGTATCAAGTGGTTCTGTTGGATTAGATA
ATGCTTTAGGGGTTGGTGGATATCCAAAAGGACGCATTACTGAAATCTTTGGTCCTGAATCTTCAGGTAAGACAACTATA
GCATTACATGCAATTGCAGAAGCGCAAAAAGAAGGTGGAACAGCGGCATTTATTGATGCAGAGCATGCCCTTGACCCTAG
TTATGCACAGAAATTAGGTGTGAATATTGATGAACTGCTCATGTCACAACCAGATACAGGAGAGCAAGCACTAGAGATTG
CAGAAGCTCTAGTTAGAAGTGGGGCTGTAGATATCATTGTGATAGATTCTGTAGCTGCTTTAGTCCCGAAAGCGGAAATT
GATGGGGACATGGGAGATTCACATGTGGGATTGCAGGCTAGATTGATGGGGCAGGCAATGAGAAAAATATCAGGAGCAAT
ATCCAAAAATGGAGTTGTAGCAATATTTTTAAATCAAATCAGAGAAAAAGTTGGTGTTTCTTTTGGGAGTCCTGAGACAA
CACCAGGTGGTAGGGCGTTAAAATTCTATTCAACAATTCGACTAGATGTACGTAGAGGAGAACAGTTGAAAGGAAAAGAG
AGTGACGTTTTAGGGAATAAAACAAAAGTGAAAGTAGTAAAAAATAAAGTTGCTCCACCATTTAAAAACATTGACTTTGA
CATCTTATACGGAGAAGGAATCTCCTTAGAGGGAGAGCTTATTGATATTGGTGTAGATTTAGATATTGTTCAGAAAAGTG
GGGCATGGTACTCGTATCAAGAAGAACGTCTTGGACAGGGTAGAGACAATGCCAAACAATTTCTGAAAGAGAATGAAAAC
ATAAGTAATTCTGTTCGAAATGAAATTTATGAATACTATTCTCCAAAAGAAGATTCTGTTGTTGTGAAAGAGGGGCTTAT
AAATGAAAATGAGCCCATTACTTTAAAAGAGTCGGAATAA
ATGGCAGCAACTGAAAATACAACTAAAGGAAAAGAGAAAGCATTAGAAGAGGCTCTGAAGAAAATCGTAAAAGAATTTGG
TACAGGGGCTATTATGAAACTGGGTGAGCGACCTAATCAAAAAGTATCTGTCGTATCAAGTGGTTCTGTTGGATTAGATA
ATGCTTTAGGGGTTGGTGGATATCCAAAAGGACGCATTACTGAAATCTTTGGTCCTGAATCTTCAGGTAAGACAACTATA
GCATTACATGCAATTGCAGAAGCGCAAAAAGAAGGTGGAACAGCGGCATTTATTGATGCAGAGCATGCCCTTGACCCTAG
TTATGCACAGAAATTAGGTGTGAATATTGATGAACTGCTCATGTCACAACCAGATACAGGAGAGCAAGCACTAGAGATTG
CAGAAGCTCTAGTTAGAAGTGGGGCTGTAGATATCATTGTGATAGATTCTGTAGCTGCTTTAGTCCCGAAAGCGGAAATT
GATGGGGACATGGGAGATTCACATGTGGGATTGCAGGCTAGATTGATGGGGCAGGCAATGAGAAAAATATCAGGAGCAAT
ATCCAAAAATGGAGTTGTAGCAATATTTTTAAATCAAATCAGAGAAAAAGTTGGTGTTTCTTTTGGGAGTCCTGAGACAA
CACCAGGTGGTAGGGCGTTAAAATTCTATTCAACAATTCGACTAGATGTACGTAGAGGAGAACAGTTGAAAGGAAAAGAG
AGTGACGTTTTAGGGAATAAAACAAAAGTGAAAGTAGTAAAAAATAAAGTTGCTCCACCATTTAAAAACATTGACTTTGA
CATCTTATACGGAGAAGGAATCTCCTTAGAGGGAGAGCTTATTGATATTGGTGTAGATTTAGATATTGTTCAGAAAAGTG
GGGCATGGTACTCGTATCAAGAAGAACGTCTTGGACAGGGTAGAGACAATGCCAAACAATTTCTGAAAGAGAATGAAAAC
ATAAGTAATTCTGTTCGAAATGAAATTTATGAATACTATTCTCCAAAAGAAGATTCTGTTGTTGTGAAAGAGGGGCTTAT
AAATGAAAATGAGCCCATTACTTTAAAAGAGTCGGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.