Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6958_RS19335 Genome accession   NZ_CP082904
Coordinates   4079369..4080889 (+) Length   506 a.a.
NCBI ID   WP_249892606.1    Uniprot ID   -
Organism   Mixta hanseatica isolate X22927     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4074369..4085889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6958_RS19315 (K6958_19300) ilvE 4075940..4076869 (-) 930 WP_249892603.1 branched-chain-amino-acid transaminase -
  K6958_RS19320 (K6958_19305) ilvM 4076888..4077145 (-) 258 WP_249892604.1 acetolactate synthase 2 small subunit -
  K6958_RS19325 (K6958_19310) ilvG 4077142..4078788 (-) 1647 WP_249892605.1 acetolactate synthase 2 catalytic subunit -
  K6958_RS19330 (K6958_19315) ilvL 4078938..4079036 (-) 99 WP_071883719.1 ilv operon leader peptide -
  K6958_RS19335 (K6958_19320) comM 4079369..4080889 (+) 1521 WP_249892606.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6958_RS19340 (K6958_19325) - 4080953..4081291 (-) 339 WP_103060850.1 DUF413 domain-containing protein -
  K6958_RS19345 (K6958_19330) hdfR 4081414..4082241 (+) 828 WP_249892607.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55052.72 Da        Isoelectric Point: 8.8150

>NTDB_id=603422 K6958_RS19335 WP_249892606.1 4079369..4080889(+) (comM) [Mixta hanseatica isolate X22927]
MSLSRVTTRAALGVEAPLVTVEVHISRGLPGLSLVGLPEKTVKEARDRVRSAIINSGFTFPAKRVTVNLAPADLPKEGGR
FDLPIAIAILAAAEQLPGVKLAQFEFLGELALSGALRGVQGAIPAAMAAKEAGRRLILPAENAADVGLVQQGESLVADSL
MEICAFLLQQRSLSPGQVEEPICEEKNEDLQDIIGQQQGKRALEIAAAGGHNLLLIGPPGTGKTMLAMRLTGLLPPLTDK
EALECAIIASIVKSGDVHKQWRKRPFRLPHHSATLYALTGGGSIPQPGEITLAHNGVLFLDELPEFNRKTLDALREPLET
GEITISRARAKVTWPARFQLVAAMNPSPTGHYQGTHNRSTPQQTLRYLSRLSGPFLDRFDLSLEIPLLPAGMLSQPQKNI
EGSHEVRLRVLEARQRQLARQGKVNALMSNAEVQQWCGLQKGDAEWLESVLVKLGLSVRAWQRLLKVSRTIADLAAEEVL
NRTHLLEALSYRGMDRMMAHLHNSME

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=603422 K6958_RS19335 WP_249892606.1 4079369..4080889(+) (comM) [Mixta hanseatica isolate X22927]
ATGTCTTTATCCCGCGTGACGACACGTGCTGCCCTGGGCGTAGAAGCGCCGCTGGTGACGGTAGAAGTGCATATCAGCAG
GGGTTTGCCCGGTCTGTCTTTAGTTGGTTTACCTGAAAAAACGGTGAAGGAAGCACGTGACAGAGTACGTAGCGCCATTA
TTAATAGCGGCTTCACTTTCCCGGCAAAGCGCGTCACGGTCAACCTCGCCCCGGCTGATTTGCCTAAGGAGGGCGGCCGC
TTCGATCTTCCCATCGCTATCGCTATCCTTGCCGCAGCAGAACAACTTCCGGGTGTAAAACTCGCTCAGTTTGAATTCCT
GGGAGAGCTGGCGCTTAGCGGCGCGCTCAGAGGCGTACAGGGTGCCATCCCCGCAGCGATGGCGGCGAAAGAGGCAGGCA
GAAGATTAATTTTACCCGCTGAAAATGCGGCAGATGTGGGTTTAGTGCAACAGGGGGAATCACTGGTTGCAGACAGCCTG
ATGGAGATCTGTGCTTTTCTTTTACAGCAGCGCTCGCTTTCCCCCGGGCAGGTAGAGGAGCCCATATGTGAAGAGAAAAA
CGAAGATCTACAGGATATCATCGGGCAACAGCAGGGAAAGCGCGCGCTGGAAATTGCCGCAGCCGGAGGACATAACCTGC
TGCTTATTGGCCCGCCGGGAACAGGAAAAACTATGCTGGCGATGCGACTGACAGGGCTGCTGCCGCCACTCACCGATAAG
GAAGCTCTGGAGTGCGCCATTATTGCCAGCATCGTAAAAAGCGGTGATGTGCATAAGCAATGGCGAAAGCGGCCATTTCG
CCTCCCCCATCATAGCGCAACGCTCTATGCACTGACTGGCGGAGGAAGCATTCCACAGCCGGGCGAAATTACGCTGGCGC
ATAATGGGGTACTGTTTCTGGATGAACTACCCGAGTTCAATCGTAAAACCCTGGATGCTTTGCGTGAGCCATTAGAAACC
GGTGAGATTACGATTTCCCGCGCCCGGGCTAAAGTGACCTGGCCGGCACGTTTTCAACTGGTTGCCGCAATGAATCCCAG
CCCAACGGGACATTATCAGGGTACACATAACCGTAGCACGCCGCAGCAAACGCTGCGCTATCTCAGCCGTTTATCCGGCC
CTTTTCTCGATCGCTTTGACCTTTCGTTGGAAATACCGCTGTTACCGGCAGGAATGTTAAGCCAGCCGCAAAAGAATATT
GAAGGCAGCCATGAGGTACGTTTACGGGTGCTGGAGGCGCGTCAACGCCAACTGGCGCGACAAGGCAAGGTAAATGCATT
AATGAGCAACGCAGAAGTGCAGCAGTGGTGTGGATTACAAAAAGGCGATGCAGAATGGCTGGAGTCGGTTTTGGTTAAGC
TGGGGCTTTCCGTCAGGGCGTGGCAACGCCTGCTGAAAGTATCTCGTACGATAGCTGATTTAGCTGCGGAAGAAGTGCTT
AACCGCACTCACCTGCTGGAGGCGTTAAGCTATCGCGGCATGGATCGTATGATGGCGCATTTGCATAACAGCATGGAATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.252

100

0.619
  comM Glaesserella parasuis strain SC1401

61.341

100

0.615
  comM Vibrio cholerae strain A1552

61.355

99.209

0.609
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

49.194

98.024

0.482
  comM Legionella pneumophila strain ERS1305867

49.194

98.024

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445