Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K8O95_RS03360 Genome accession   NZ_CP082887
Coordinates   695493..697007 (-) Length   504 a.a.
NCBI ID   WP_223379678.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain FDAARGOS_1459     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 690493..702007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O95_RS03335 (K8O95_03335) - 691728..692363 (-) 636 WP_042027151.1 nicotinamidase -
  K8O95_RS03340 (K8O95_03340) - 692438..693088 (+) 651 WP_026457335.1 NUDIX hydrolase -
  K8O95_RS03345 (K8O95_03345) - 693085..693570 (+) 486 WP_223379675.1 DUF523 domain-containing protein -
  K8O95_RS03350 (K8O95_03350) - 693516..694469 (-) 954 WP_223379676.1 acyltransferase -
  K8O95_RS03355 (K8O95_03355) - 694463..695377 (-) 915 WP_223379677.1 acyltransferase -
  K8O95_RS03360 (K8O95_03360) comM 695493..697007 (-) 1515 WP_223379678.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K8O95_RS03365 (K8O95_03365) ilvG 697393..699039 (+) 1647 WP_223379679.1 acetolactate synthase 2 catalytic subunit -
  K8O95_RS03370 (K8O95_03370) ilvM 699036..699287 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  K8O95_RS03375 (K8O95_03375) - 699300..700244 (+) 945 WP_223379680.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54605.47 Da        Isoelectric Point: 7.2854

>NTDB_id=603362 K8O95_RS03360 WP_223379678.1 695493..697007(-) (comM) [Aeromonas enteropelogenes strain FDAARGOS_1459]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASTVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=603362 K8O95_RS03360 WP_223379678.1 695493..697007(-) (comM) [Aeromonas enteropelogenes strain FDAARGOS_1459]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCCCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGCCTACCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGTGCCCTGC
TCAACGGCAATTTCGAGTTTCCGTCCAAGCACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGACCTGGCCATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCTGCAAAATACCTGCTCGATCACGAATTTTT
GGGCGAGCTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCCGGAC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCACTGATCCAGGACGCCGAAGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTATGAGCTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGACGT
GCCAGACCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAAATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGCCACTGGCACCACAGGCCCTATCG
AACGCCCCACCACAGCGCCTCGACAGTGGCGCTGGTGGGTGGTGGCAGCCACCCAAGGCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGCGCCGCCCGCCAGGTCGATTTCCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGCCACTACGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAACGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAATTT
GCTTGATAGCCGCGAAATCGAAGAAATTTGCCGCTTGTCGCCGCAAGATGCCGAATTTCTGGAGAACGCCATCCAGAAGC
TTGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.603

0.635
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466