Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K8O84_RS10355 Genome accession   NZ_CP082862
Coordinates   2142318..2143856 (-) Length   512 a.a.
NCBI ID   WP_150982895.1    Uniprot ID   -
Organism   Cupriavidus pauculus strain FDAARGOS_1472     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2137318..2148856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O84_RS10335 (K8O84_10295) - 2139289..2139825 (-) 537 WP_061959691.1 TlpA disulfide reductase family protein -
  K8O84_RS10340 (K8O84_10300) - 2140080..2140577 (-) 498 WP_407648705.1 thioredoxin fold domain-containing protein -
  K8O84_RS10345 (K8O84_10305) - 2140714..2141298 (+) 585 WP_150982897.1 hypothetical protein -
  K8O84_RS10350 (K8O84_10310) - 2141326..2141976 (+) 651 WP_150982896.1 LysE family transporter -
  K8O84_RS10355 (K8O84_10315) comM 2142318..2143856 (-) 1539 WP_150982895.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K8O84_RS10360 (K8O84_10320) - 2143939..2144199 (-) 261 WP_150982894.1 accessory factor UbiK family protein -
  K8O84_RS10365 (K8O84_10325) - 2144714..2145520 (+) 807 WP_061960279.1 TorF family putative porin -
  K8O84_RS10370 (K8O84_10330) - 2145578..2145916 (+) 339 WP_150982893.1 P-II family nitrogen regulator -
  K8O84_RS10375 (K8O84_10335) amt 2145949..2147493 (+) 1545 WP_223505638.1 ammonium transporter -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55186.06 Da        Isoelectric Point: 7.7704

>NTDB_id=603225 K8O84_RS10355 WP_150982895.1 2142318..2143856(-) (comM) [Cupriavidus pauculus strain FDAARGOS_1472]
MSLAVLRSRALTGIDAPPVSVEIHLANGLPAFNIVGLADTEVRESRERVRAALLNSEFEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQVPGDRLDAFEFAGELSLAGDLRPVRGALAMAMGLAQDNRARVSHGHAARAFIVAGDNGREAALVE
DLSVFAGATLRDVCHHIGLPPEQPLPRAQPPRRPVDTDAGPDMRDVRGQAQARRAMEIAAAGQHSVLLVGPPGTGKSMLA
QRFPGLLPPMTEAEALEAAALQSLSTGGFHPALWGRRPFRSPHHTASAPAMVGGGGNPRPGEISLAHHGVLFLDELPEFE
RRVLEVLREPLETGRITISRAAAQADFPARFQFVAAMNPCPCGYLGHPTRMCRCTPDQIQRYQSRISGPLLDRVDLQIHV
PAQSQQEIFDGPPGERSAVLRDRAVLARQRQMARQGMPNSALAGRDIDTHCPLDAEAQTLLRSAIEKLGWSARAYFRVLK
VARTIADLADCDVLDAGHVAEAIQYRRVLRSA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=603225 K8O84_RS10355 WP_150982895.1 2142318..2143856(-) (comM) [Cupriavidus pauculus strain FDAARGOS_1472]
ATGAGCCTCGCTGTCCTGCGCAGCCGCGCGCTGACCGGCATCGACGCCCCGCCCGTCTCGGTGGAAATCCATCTGGCCAA
CGGCCTGCCCGCGTTCAATATCGTCGGCCTTGCCGATACCGAAGTGCGCGAGAGCCGCGAGCGCGTGCGCGCGGCCTTGC
TGAACAGCGAATTCGAATTTCCGAACCGCCGTATCACCGTCAATCTGGCGCCGGCGGACCTGCCCAAGGAGTCGGGCCGG
TTCGACCTGGCGATCGCGCTGGGCATCCTGGCGGCCAGCGGGCAAGTGCCGGGCGACAGGCTGGATGCCTTCGAGTTTGC
CGGCGAGCTGTCGCTGGCCGGCGATCTGCGCCCCGTGCGCGGCGCGCTGGCCATGGCAATGGGGCTGGCGCAAGACAACC
GCGCGCGCGTATCCCACGGTCACGCGGCGCGGGCCTTTATCGTTGCAGGAGACAACGGCCGCGAGGCGGCGCTGGTCGAA
GACCTGTCGGTGTTTGCCGGCGCCACGCTGCGCGACGTCTGCCATCACATCGGACTGCCGCCCGAGCAGCCCTTGCCGCG
CGCCCAGCCGCCTCGCCGCCCCGTCGACACCGACGCCGGCCCGGACATGCGCGACGTGCGCGGCCAGGCGCAGGCCCGCC
GCGCGATGGAAATCGCCGCGGCGGGTCAGCATTCGGTGCTGCTGGTCGGGCCGCCGGGCACCGGCAAATCGATGCTCGCC
CAGCGCTTTCCCGGGCTGCTGCCGCCGATGACCGAAGCCGAGGCGCTGGAGGCCGCCGCGCTGCAAAGCCTGTCGACCGG
CGGATTCCACCCGGCGCTATGGGGACGGCGGCCATTCCGCAGCCCGCACCACACCGCCAGCGCGCCGGCCATGGTCGGCG
GTGGAGGCAATCCACGCCCCGGTGAAATTTCATTGGCCCATCACGGCGTGCTGTTCCTCGATGAACTGCCGGAGTTCGAG
CGCCGCGTGCTGGAAGTTCTGCGCGAGCCGCTGGAAACCGGCCGCATCACGATATCGCGCGCCGCCGCACAGGCCGATTT
CCCGGCGCGTTTCCAATTCGTCGCGGCCATGAACCCGTGCCCATGCGGCTATCTGGGCCACCCCACGCGGATGTGCCGCT
GCACGCCGGACCAGATCCAGCGCTACCAGTCGCGCATCTCGGGCCCATTGCTGGATCGCGTAGACCTGCAGATCCATGTG
CCCGCGCAAAGTCAGCAGGAAATCTTCGATGGCCCGCCCGGCGAGCGAAGCGCCGTGCTGCGCGATCGTGCGGTGCTCGC
GCGGCAGCGTCAGATGGCGCGCCAGGGCATGCCGAACAGTGCGCTGGCGGGCCGCGACATCGACACGCATTGCCCGCTCG
ACGCCGAAGCCCAGACGCTGCTGCGCAGCGCGATCGAAAAGCTTGGGTGGTCGGCGCGCGCGTATTTCAGGGTTCTCAAG
GTGGCGCGCACGATTGCCGATCTTGCCGATTGCGACGTGCTGGACGCCGGCCACGTGGCCGAAGCGATCCAGTACCGGCG
CGTCCTGCGCAGCGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.318

100

0.494
  comM Vibrio cholerae strain A1552

49.901

99.023

0.494
  comM Vibrio campbellii strain DS40M4

48.728

99.805

0.486
  comM Legionella pneumophila str. Paris

47.692

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.692

100

0.484
  comM Glaesserella parasuis strain SC1401

47.852

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.353

100

0.439