Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K8P04_RS06460 Genome accession   NZ_CP082856
Coordinates   1288916..1289263 (+) Length   115 a.a.
NCBI ID   WP_015701999.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1479     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283916..1294263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P04_RS06445 (K8P04_06380) - 1285662..1287221 (+) 1560 WP_042594414.1 phosphoethanolamine transferase -
  K8P04_RS06450 (K8P04_06385) lspA 1287291..1287806 (+) 516 WP_005664259.1 signal peptidase II -
  K8P04_RS06455 (K8P04_06390) ispH 1287803..1288747 (+) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K8P04_RS06460 (K8P04_06395) comE1/comEA 1288916..1289263 (+) 348 WP_015701999.1 helix-hairpin-helix domain-containing protein Machinery gene
  K8P04_RS06465 (K8P04_06400) - 1289310..1290068 (-) 759 WP_015702000.1 DeoR/GlpR family DNA-binding transcription regulator -
  K8P04_RS06470 (K8P04_06405) ltnD 1290239..1291144 (+) 906 WP_015702001.1 L-threonate dehydrogenase -
  K8P04_RS06475 (K8P04_06410) otnK 1291147..1292388 (+) 1242 WP_015702002.1 3-oxo-tetronate kinase -
  K8P04_RS06480 (K8P04_06415) otnC 1292385..1293017 (+) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  K8P04_RS06485 (K8P04_06420) otnI 1293020..1293796 (+) 777 WP_005647880.1 2-oxo-tetronate isomerase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12431.20 Da        Isoelectric Point: 8.5047

>NTDB_id=603100 K8P04_RS06460 WP_015701999.1 1288916..1289263(+) (comE1/comEA) [Haemophilus influenzae strain FDAARGOS_1479]
MKLMKTLFTSVVLYGSLVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=603100 K8P04_RS06460 WP_015701999.1 1288916..1289263(+) (comE1/comEA) [Haemophilus influenzae strain FDAARGOS_1479]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTATGGTTCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374
  comEA Vibrio cholerae C6706

39.091

95.652

0.374
  comEA Vibrio cholerae strain A1552

39.091

95.652

0.374