Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K8P04_RS02235 Genome accession   NZ_CP082856
Coordinates   475418..475924 (+) Length   168 a.a.
NCBI ID   WP_015701477.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1479     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 470418..480924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P04_RS02230 (K8P04_02220) uvrA 472432..475263 (-) 2832 WP_015701476.1 excinuclease ABC subunit UvrA -
  K8P04_RS02235 (K8P04_02225) ssb 475418..475924 (+) 507 WP_015701477.1 single-stranded DNA-binding protein Machinery gene
  K8P04_RS02240 (K8P04_02230) - 476075..477355 (+) 1281 WP_016533798.1 site-specific integrase -
  K8P04_RS02245 (K8P04_02235) - 477342..478862 (+) 1521 WP_014550508.1 site-specific integrase -
  K8P04_RS02250 (K8P04_02240) - 478865..480904 (+) 2040 WP_005631036.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18807.64 Da        Isoelectric Point: 5.2733

>NTDB_id=603071 K8P04_RS02235 WP_015701477.1 475418..475924(+) (ssb) [Haemophilus influenzae strain FDAARGOS_1479]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGFSNEMGSSPQPSYQARQTNNGGNYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=603071 K8P04_RS02235 WP_015701477.1 475418..475924(+) (ssb) [Haemophilus influenzae strain FDAARGOS_1479]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGCCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTTCTCTAATGAGATGGGATCTTCACCACAACCTTCTTACCAAGCTCGTC
AAACTAATAATGGTGGTAATTATCAATCATCTCGTCCAGCGCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.306

100

0.744
  ssb Vibrio cholerae strain A1552

56.425

100

0.601
  ssb Neisseria meningitidis MC58

50.867

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.375