Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   K8B76_RS09395 Genome accession   NZ_CP082820
Coordinates   1872142..1873095 (-) Length   317 a.a.
NCBI ID   WP_000345080.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SCAID PHRX1-2021     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1867142..1878095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B76_RS09370 (K8B76_09370) - 1867903..1868526 (-) 624 WP_000932636.1 hypothetical protein -
  K8B76_RS09375 (K8B76_09375) jag 1868577..1869563 (-) 987 WP_000260015.1 RNA-binding cell elongation regulator Jag/EloR -
  K8B76_RS09380 (K8B76_09380) - 1869582..1870406 (-) 825 WP_000727909.1 membrane protein insertase YidC -
  K8B76_RS09385 (K8B76_09385) rnpA 1870381..1870752 (-) 372 WP_000739246.1 ribonuclease P protein component -
  K8B76_RS10890 - 1870769..1870900 (-) 132 WP_000768904.1 hypothetical protein -
  K8B76_RS09390 (K8B76_09390) - 1870901..1872091 (-) 1191 WP_000167769.1 acetate kinase -
  K8B76_RS09395 (K8B76_09395) comYH 1872142..1873095 (-) 954 WP_000345080.1 class I SAM-dependent methyltransferase Machinery gene
  K8B76_RS09400 (K8B76_09400) - 1873156..1873750 (-) 595 Protein_1851 class I SAM-dependent methyltransferase -
  K8B76_RS09405 (K8B76_09405) comGG/cglG 1873853..1874299 (-) 447 WP_001842224.1 competence type IV pilus minor pilin ComGG Machinery gene
  K8B76_RS09410 (K8B76_09410) comGF/cglF 1874277..1874738 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  K8B76_RS09415 (K8B76_09415) comGE/cglE 1874701..1875003 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  K8B76_RS09420 (K8B76_09420) comGD/cglD 1874966..1875370 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  K8B76_RS09425 (K8B76_09425) comGC/cglC 1875363..1875689 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  K8B76_RS09430 (K8B76_09430) comGB/cglB 1875691..1876707 (-) 1017 WP_078102766.1 competence type IV pilus assembly protein ComGB Machinery gene
  K8B76_RS09435 (K8B76_09435) comGA/cglA/cilD 1876655..1877596 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  K8B76_RS09440 (K8B76_09440) - 1877672..1878037 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35728.98 Da        Isoelectric Point: 4.2474

>NTDB_id=602568 K8B76_RS09395 WP_000345080.1 1872142..1873095(-) (comYH) [Streptococcus pneumoniae strain SCAID PHRX1-2021]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQVNHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=602568 K8B76_RS09395 WP_000345080.1 1872142..1873095(-) (comYH) [Streptococcus pneumoniae strain SCAID PHRX1-2021]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAACTAGAACAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGTCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGTATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539