Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6754_RS01855 Genome accession   NZ_CP082317
Coordinates   399441..399980 (+) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain SXV3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 394441..404980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6754_RS01840 (K6754_01840) uvrA 394515..397337 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  K6754_RS01845 (K6754_01845) galU 397487..398359 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6754_RS01850 (K6754_01850) qstR 398519..399163 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6754_RS01855 (K6754_01855) ssb 399441..399980 (+) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  K6754_RS01860 (K6754_01860) csrD 400222..402231 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6754_RS01865 (K6754_01865) - 402243..403688 (+) 1446 WP_054575328.1 hypothetical protein -
  K6754_RS01870 (K6754_01870) gspM 403685..404335 (+) 651 WP_005381197.1 type II secretion system protein GspM -
  K6754_RS01875 (K6754_01875) - 404328..404660 (+) 333 WP_005381196.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=601366 K6754_RS01855 WP_005387798.1 399441..399980(+) (ssb) [Vibrio alginolyticus strain SXV3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=601366 K6754_RS01855 WP_005387798.1 399441..399980(+) (ssb) [Vibrio alginolyticus strain SXV3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464