Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NF669_RS01065 Genome accession   NZ_CP098924
Coordinates   242404..243357 (-) Length   317 a.a.
NCBI ID   WP_301557214.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain yellow     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 237404..248357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF669_RS01045 (NF669_01045) lptE 237991..238530 (-) 540 WP_012457373.1 LPS assembly lipoprotein LptE -
  NF669_RS01050 (NF669_01050) - 238517..239770 (-) 1254 WP_301557211.1 sigma-54 dependent transcriptional regulator -
  NF669_RS01055 (NF669_01055) - 239798..241066 (-) 1269 WP_301557212.1 hypothetical protein -
  NF669_RS01060 (NF669_01060) rimO 241103..242407 (-) 1305 WP_301557213.1 30S ribosomal protein S12 methylthiotransferase RimO -
  NF669_RS01065 (NF669_01065) pilA 242404..243357 (-) 954 WP_301557214.1 signal recognition particle-docking protein FtsY Machinery gene
  NF669_RS01070 (NF669_01070) nspC 243384..244520 (-) 1137 WP_099779499.1 carboxynorspermidine decarboxylase -
  NF669_RS01075 (NF669_01075) aspS 244530..246293 (-) 1764 WP_077112157.1 aspartate--tRNA ligase -
  NF669_RS10995 - 246479..246727 (-) 249 WP_363324469.1 DUF1661 domain-containing protein -
  NF669_RS01080 (NF669_01080) ribD 246724..247716 (-) 993 WP_301557215.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34214.22 Da        Isoelectric Point: 5.8684

>NTDB_id=601366 NF669_RS01065 WP_301557214.1 242404..243357(-) (pilA) [Porphyromonas gingivalis strain yellow]
MGLFGFFSKKKKETLDEGLSKTKENVFAKITRAVAGKSKVDDEVLDELENVLVTSDVGVDTTLKIIKRIEERVARDKYVS
TSELTTILRQEIASLLTENGSADGDSFDLPSGTKPYVIMVVGVNGVGKTTTIGKLAHRFRQAGKSVVLGAADTFRAAAVE
QLEIWSERVGVPIIKQQMGSDPASVAYDTVSSAVANGVDVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVPDAPHEILLV
LDGSTGQNAFEQARQFTAATEVNALAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQIFRKKEFVDSLFGE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=601366 NF669_RS01065 WP_301557214.1 242404..243357(-) (pilA) [Porphyromonas gingivalis strain yellow]
ATGGGATTATTCGGATTTTTCTCGAAGAAGAAAAAAGAGACTTTGGACGAAGGCCTGTCCAAGACCAAAGAAAACGTATT
CGCCAAGATCACCCGTGCCGTAGCCGGTAAGAGCAAAGTGGACGATGAGGTCTTGGACGAATTGGAAAACGTGCTGGTGA
CTTCGGATGTGGGTGTCGATACCACATTGAAGATCATCAAACGTATAGAGGAACGAGTGGCTCGCGACAAATATGTTTCC
ACCTCCGAGCTGACGACTATCCTCCGTCAAGAGATCGCCTCGCTGCTCACGGAGAACGGATCGGCCGATGGCGACAGCTT
CGACCTACCCTCCGGTACCAAACCTTATGTAATCATGGTAGTGGGCGTAAACGGCGTAGGCAAGACCACTACCATCGGCA
AACTGGCACATCGCTTTCGTCAGGCAGGCAAGAGCGTCGTGCTCGGGGCTGCCGATACCTTCCGTGCTGCGGCCGTAGAG
CAGTTGGAGATCTGGTCCGAGCGAGTAGGAGTGCCTATCATCAAGCAGCAGATGGGTAGCGATCCGGCTTCGGTGGCTTA
TGACACAGTCAGTTCGGCCGTGGCTAACGGCGTCGATGTCGTGATCATCGATACAGCCGGACGTCTGCACAATAAGGTCA
ATCTGATGAACGAACTGACGAAGATCAAGCGTGTGATGCAGAAGGTAGTGCCCGACGCTCCGCATGAGATTTTATTGGTA
TTGGACGGATCCACCGGTCAGAATGCTTTCGAACAGGCAAGGCAGTTCACCGCAGCGACTGAAGTGAATGCCCTCGCCGT
GACCAAGCTCGACGGGACAGCTAAGGGAGGTGTGGTGATCGGCATATCCGATCAGTTCAAGATACCGGTGAAGTACATTG
GCTTGGGTGAGGGCATAGACGACCTGCAGATCTTCCGTAAGAAGGAATTCGTGGACTCTCTCTTTGGCGAATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(116-315)

SRP54-type protein, helical bundle domain (SRP54_N)

(29-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

44.85

94.953

0.426