Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K6754_RS01850 Genome accession   NZ_CP082317
Coordinates   398519..399163 (-) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain SXV3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 393519..404163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6754_RS01840 (K6754_01840) uvrA 394515..397337 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  K6754_RS01845 (K6754_01845) galU 397487..398359 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6754_RS01850 (K6754_01850) qstR 398519..399163 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6754_RS01855 (K6754_01855) ssb 399441..399980 (+) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  K6754_RS01860 (K6754_01860) csrD 400222..402231 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6754_RS01865 (K6754_01865) - 402243..403688 (+) 1446 WP_054575328.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=601365 K6754_RS01850 WP_005381237.1 398519..399163(-) (qstR) [Vibrio alginolyticus strain SXV3]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=601365 K6754_RS01850 WP_005381237.1 398519..399163(-) (qstR) [Vibrio alginolyticus strain SXV3]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATAGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACAGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTATATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519