Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6752_RS01815 Genome accession   NZ_CP082315
Coordinates   390749..391288 (+) Length   179 a.a.
NCBI ID   WP_238972176.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 385749..396288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS01800 (K6752_01800) uvrA 385823..388645 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  K6752_RS01805 (K6752_01805) galU 388795..389667 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6752_RS01810 (K6752_01810) qstR 389827..390471 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6752_RS01815 (K6752_01815) ssb 390749..391288 (+) 540 WP_238972176.1 single-stranded DNA-binding protein Machinery gene
  K6752_RS01820 (K6752_01820) csrD 391531..393540 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6752_RS01825 (K6752_01825) - 393552..394997 (+) 1446 WP_005381199.1 hypothetical protein -
  K6752_RS01830 (K6752_01830) gspM 394994..395644 (+) 651 WP_005381197.1 type II secretion system protein GspM -
  K6752_RS01835 (K6752_01835) - 395637..395969 (+) 333 WP_005381196.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.97 Da        Isoelectric Point: 5.2257

>NTDB_id=601319 K6752_RS01815 WP_238972176.1 390749..391288(+) (ssb) [Vibrio alginolyticus strain ZLV3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQKQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=601319 K6752_RS01815 WP_238972176.1 390749..391288(+) (ssb) [Vibrio alginolyticus strain ZLV3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAAAAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.435

100

0.827
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458