Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K6752_RS01810 Genome accession   NZ_CP082315
Coordinates   389827..390471 (-) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain ZLV3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 384827..395471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS01800 (K6752_01800) uvrA 385823..388645 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  K6752_RS01805 (K6752_01805) galU 388795..389667 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6752_RS01810 (K6752_01810) qstR 389827..390471 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6752_RS01815 (K6752_01815) ssb 390749..391288 (+) 540 WP_238972176.1 single-stranded DNA-binding protein Machinery gene
  K6752_RS01820 (K6752_01820) csrD 391531..393540 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6752_RS01825 (K6752_01825) - 393552..394997 (+) 1446 WP_005381199.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=601318 K6752_RS01810 WP_005381237.1 389827..390471(-) (qstR) [Vibrio alginolyticus strain ZLV3]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=601318 K6752_RS01810 WP_005381237.1 389827..390471(-) (qstR) [Vibrio alginolyticus strain ZLV3]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAATTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAAGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519