Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6750_RS01785 Genome accession   NZ_CP082313
Coordinates   384929..385468 (+) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain ZZV2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 379929..390468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6750_RS01770 (K6750_01770) uvrA 379995..382817 (-) 2823 WP_238966809.1 excinuclease ABC subunit UvrA -
  K6750_RS01775 (K6750_01775) galU 382956..383828 (-) 873 WP_009707668.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6750_RS01780 (K6750_01780) qstR 383991..384635 (-) 645 WP_009707667.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6750_RS01785 (K6750_01785) ssb 384929..385468 (+) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  K6750_RS01790 (K6750_01790) csrD 385710..387719 (+) 2010 WP_171346111.1 RNase E specificity factor CsrD -
  K6750_RS01795 (K6750_01795) - 387731..389176 (+) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  K6750_RS01800 (K6750_01800) gspM 389173..389823 (+) 651 WP_005381197.1 type II secretion system protein GspM -
  K6750_RS01805 (K6750_01805) - 389816..390148 (+) 333 WP_005381196.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=601272 K6750_RS01785 WP_005387798.1 384929..385468(+) (ssb) [Vibrio alginolyticus strain ZZV2]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=601272 K6750_RS01785 WP_005387798.1 384929..385468(+) (ssb) [Vibrio alginolyticus strain ZZV2]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464