Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K6750_RS01780 Genome accession   NZ_CP082313
Coordinates   383991..384635 (-) Length   214 a.a.
NCBI ID   WP_009707667.1    Uniprot ID   A0A812F937
Organism   Vibrio alginolyticus strain ZZV2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 378991..389635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6750_RS01770 (K6750_01770) uvrA 379995..382817 (-) 2823 WP_238966809.1 excinuclease ABC subunit UvrA -
  K6750_RS01775 (K6750_01775) galU 382956..383828 (-) 873 WP_009707668.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6750_RS01780 (K6750_01780) qstR 383991..384635 (-) 645 WP_009707667.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6750_RS01785 (K6750_01785) ssb 384929..385468 (+) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  K6750_RS01790 (K6750_01790) csrD 385710..387719 (+) 2010 WP_171346111.1 RNase E specificity factor CsrD -
  K6750_RS01795 (K6750_01795) - 387731..389176 (+) 1446 WP_167415479.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24508.40 Da        Isoelectric Point: 9.5077

>NTDB_id=601271 K6750_RS01780 WP_009707667.1 383991..384635(-) (qstR) [Vibrio alginolyticus strain ZZV2]
MKKSAYARKLFLISMEDGAAKKVEALEKYTDINIPVISTQALMEANPKHRNKILLIDFSEHKELVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLTFGQLKGIFYQDSSLEQIGEGLKEIVNGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=601271 K6750_RS01780 WP_009707667.1 383991..384635(-) (qstR) [Vibrio alginolyticus strain ZZV2]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTGATCAGCATGGAAGATGGTGCAGCGAAAAAGGTCGAAGCTCTGGA
AAAATACACTGACATCAACATCCCTGTCATTTCGACTCAAGCTTTGATGGAAGCCAACCCGAAACACCGCAATAAAATCT
TGTTGATCGACTTTAGTGAACATAAAGAACTGGTTCAATCGATCAAAAATCTGCCGTTGATCTGGAAAAATTTTGAAACA
GTGGTGTTCAATGTACCTAAGCGTTTGACTACGGATGAATTGCTGACATTTGGCCAATTGAAAGGCATTTTCTACCAAGA
TAGTTCTTTAGAACAAATTGGGGAGGGTTTAAAAGAGATCGTAAACGGTCAGAACTGGTTGCCTCGTAATGTGACTAGCC
AACTCCTGCATTATTATCGTAATGTCATCAGTACCCACACAGCGCCAGCCACCGTCGATTTGACCATTCGTGAGCTGCAA
GTCTTACGCTGCCTTCAAGCGGGGGCATCGAACAATCAAATGGCGGAAGAGTTGTTCGTTAGTGAGTTCACCATCAAGTC
ACACCTGTACCAAATTTTTAAGAAGCTCTCAGTAAAAAACCGCGTACAAGCCATTGCTTGGGCTGACCAAAATCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812F937

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

95.794

100

0.958
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio cholerae strain A1552

52.804

100

0.528