Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6749_RS13660 Genome accession   NZ_CP082310
Coordinates   2926155..2926700 (-) Length   181 a.a.
NCBI ID   WP_025767596.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HYV1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2921155..2931700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6749_RS13640 (K6749_13560) - 2921474..2921806 (-) 333 WP_005381196.1 hypothetical protein -
  K6749_RS13645 (K6749_13565) gspM 2921799..2922449 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  K6749_RS13650 (K6749_13570) - 2922446..2923891 (-) 1446 WP_025767597.1 hypothetical protein -
  K6749_RS13655 (K6749_13575) csrD 2923903..2925912 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6749_RS13660 (K6749_13580) ssb 2926155..2926700 (-) 546 WP_025767596.1 single-stranded DNA-binding protein Machinery gene
  K6749_RS13665 (K6749_13585) qstR 2926978..2927622 (+) 645 WP_025767595.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6749_RS13670 (K6749_13590) galU 2927782..2928654 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6749_RS13675 (K6749_13595) uvrA 2928804..2931626 (+) 2823 WP_025767594.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20177.25 Da        Isoelectric Point: 4.9164

>NTDB_id=601246 K6749_RS13660 WP_025767596.1 2926155..2926700(-) (ssb) [Vibrio alginolyticus strain HYV1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNVPQQQQQQPQQQA
PQQSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=601246 K6749_RS13660 WP_025767596.1 2926155..2926700(-) (ssb) [Vibrio alginolyticus strain HYV1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGTGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGTGCCTCAGCAACAGCAACAGCAACCACAACAACAGGCT
CCGCAGCAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.459

100

0.812
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.58
  ssb Neisseria meningitidis MC58

44.92

100

0.464
  ssb Neisseria gonorrhoeae MS11

44.92

100

0.464