Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K6749_RS13665 Genome accession   NZ_CP082310
Coordinates   2926978..2927622 (+) Length   214 a.a.
NCBI ID   WP_025767595.1    Uniprot ID   A0A7Y0N0Z5
Organism   Vibrio alginolyticus strain HYV1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2921978..2932622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6749_RS13650 (K6749_13570) - 2922446..2923891 (-) 1446 WP_025767597.1 hypothetical protein -
  K6749_RS13655 (K6749_13575) csrD 2923903..2925912 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6749_RS13660 (K6749_13580) ssb 2926155..2926700 (-) 546 WP_025767596.1 single-stranded DNA-binding protein Machinery gene
  K6749_RS13665 (K6749_13585) qstR 2926978..2927622 (+) 645 WP_025767595.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6749_RS13670 (K6749_13590) galU 2927782..2928654 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6749_RS13675 (K6749_13595) uvrA 2928804..2931626 (+) 2823 WP_025767594.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24339.28 Da        Isoelectric Point: 10.0031

>NTDB_id=601247 K6749_RS13665 WP_025767595.1 2926978..2927622(+) (qstR) [Vibrio alginolyticus strain HYV1]
MRKSAYARKLFLISMEGNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=601247 K6749_RS13665 WP_025767595.1 2926978..2927622(+) (qstR) [Vibrio alginolyticus strain HYV1]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGGTAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0N0Z5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.393

100

0.944
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519