Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6745_RS13685 Genome accession   NZ_CP082303
Coordinates   2941086..2941631 (-) Length   181 a.a.
NCBI ID   WP_025767596.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FJV2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2936086..2946631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6745_RS13665 (K6745_13580) - 2936405..2936737 (-) 333 WP_005381196.1 hypothetical protein -
  K6745_RS13670 (K6745_13585) gspM 2936730..2937380 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  K6745_RS13675 (K6745_13590) - 2937377..2938822 (-) 1446 WP_025767597.1 hypothetical protein -
  K6745_RS13680 (K6745_13595) csrD 2938834..2940843 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6745_RS13685 (K6745_13600) ssb 2941086..2941631 (-) 546 WP_025767596.1 single-stranded DNA-binding protein Machinery gene
  K6745_RS13690 (K6745_13605) qstR 2941909..2942553 (+) 645 WP_025767595.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6745_RS13695 (K6745_13610) galU 2942713..2943585 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6745_RS13700 (K6745_13615) uvrA 2943735..2946557 (+) 2823 WP_025767594.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20177.25 Da        Isoelectric Point: 4.9164

>NTDB_id=601151 K6745_RS13685 WP_025767596.1 2941086..2941631(-) (ssb) [Vibrio alginolyticus strain FJV2]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNVPQQQQQQPQQQA
PQQSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=601151 K6745_RS13685 WP_025767596.1 2941086..2941631(-) (ssb) [Vibrio alginolyticus strain FJV2]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGTGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGTGCCTCAGCAACAGCAACAGCAACCACAACAACAGGCT
CCGCAGCAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.459

100

0.812
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.58
  ssb Neisseria meningitidis MC58

44.92

100

0.464
  ssb Neisseria gonorrhoeae MS11

44.92

100

0.464