Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   M5C73_RS05895 Genome accession   NZ_CP098790
Coordinates   1207632..1208867 (+) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis strain WiKim0124     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202632..1213867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS05870 (M5C73_05870) - 1203478..1204071 (+) 594 WP_003132093.1 xanthine phosphoribosyltransferase -
  M5C73_RS05875 (M5C73_05875) - 1204120..1205424 (+) 1305 WP_033899494.1 nucleobase:cation symporter-2 family protein -
  M5C73_RS05880 (M5C73_05880) - 1205452..1205739 (-) 288 WP_223247175.1 hypothetical protein -
  M5C73_RS05885 (M5C73_05885) - 1205974..1206483 (-) 510 WP_033899498.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  M5C73_RS05890 (M5C73_05890) - 1206882..1207388 (+) 507 WP_010905786.1 dihydrofolate reductase -
  M5C73_RS05895 (M5C73_05895) clpX 1207632..1208867 (+) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  M5C73_RS05900 (M5C73_05900) yihA 1208864..1209451 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M5C73_RS05905 (M5C73_05905) folB 1209505..1209855 (+) 351 WP_252160336.1 dihydroneopterin aldolase -
  M5C73_RS05910 (M5C73_05910) folE 1209935..1210984 (+) 1050 WP_252160337.1 GTP cyclohydrolase I FolE -
  M5C73_RS05915 (M5C73_05915) folP 1210981..1212054 (+) 1074 WP_252160338.1 dihydropteroate synthase -
  M5C73_RS05920 (M5C73_05920) - 1212057..1212554 (+) 498 WP_058211370.1 NUDIX domain-containing protein -
  M5C73_RS05925 (M5C73_05925) - 1212573..1213856 (+) 1284 WP_015426353.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=601151 M5C73_RS05895 WP_012897750.1 1207632..1208867(+) (clpX) [Lactococcus lactis strain WiKim0124]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=601151 M5C73_RS05895 WP_012897750.1 1207632..1208867(+) (clpX) [Lactococcus lactis strain WiKim0124]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGTGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAGTACGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCCGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAACATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ACGTTCCATTTGCGATTGCAGATGCGACAAGTTTGACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTCTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCTGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAAG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACACCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATCGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TCCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTCTGACCGAAGAGGATTTGATTCAAATTTTGACA
GAACCTAAAAACGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAGGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATTACAAAAGTTATTATTAATGAAGCAGTTGTTGACGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564