Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K6745_RS13690 Genome accession   NZ_CP082303
Coordinates   2941909..2942553 (+) Length   214 a.a.
NCBI ID   WP_025767595.1    Uniprot ID   A0A7Y0N0Z5
Organism   Vibrio alginolyticus strain FJV2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2936909..2947553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6745_RS13675 (K6745_13590) - 2937377..2938822 (-) 1446 WP_025767597.1 hypothetical protein -
  K6745_RS13680 (K6745_13595) csrD 2938834..2940843 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6745_RS13685 (K6745_13600) ssb 2941086..2941631 (-) 546 WP_025767596.1 single-stranded DNA-binding protein Machinery gene
  K6745_RS13690 (K6745_13605) qstR 2941909..2942553 (+) 645 WP_025767595.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6745_RS13695 (K6745_13610) galU 2942713..2943585 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6745_RS13700 (K6745_13615) uvrA 2943735..2946557 (+) 2823 WP_025767594.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24339.28 Da        Isoelectric Point: 10.0031

>NTDB_id=601152 K6745_RS13690 WP_025767595.1 2941909..2942553(+) (qstR) [Vibrio alginolyticus strain FJV2]
MRKSAYARKLFLISMEGNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=601152 K6745_RS13690 WP_025767595.1 2941909..2942553(+) (qstR) [Vibrio alginolyticus strain FJV2]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGGTAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0N0Z5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.393

100

0.944
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519