Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | K6J73_RS03550 | Genome accession | NZ_AP018780 |
| Coordinates | 705768..706775 (+) | Length | 335 a.a. |
| NCBI ID | WP_005649027.1 | Uniprot ID | Q4QNM6 |
| Organism | Haemophilus influenzae strain CHBN-IV-1 isolate 13H36 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 700768..711775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J73_RS03525 (CHBNIV1_06660) | aspS | 701451..703217 (+) | 1767 | WP_221253438.1 | aspartate--tRNA ligase | - |
| K6J73_RS03530 (CHBNIV1_06670) | nudB | 703239..703712 (+) | 474 | WP_221253440.1 | dihydroneopterin triphosphate diphosphatase | - |
| K6J73_RS03535 (CHBNIV1_06680) | - | 703724..704464 (+) | 741 | WP_040034319.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| K6J73_RS03540 (CHBNIV1_06690) | ruvC | 704511..705083 (+) | 573 | WP_221253442.1 | crossover junction endodeoxyribonuclease RuvC | - |
| K6J73_RS03545 (CHBNIV1_06700) | ruvA | 705146..705760 (+) | 615 | WP_005659994.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| K6J73_RS03550 (CHBNIV1_06710) | ruvB | 705768..706775 (+) | 1008 | WP_005649027.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| K6J73_RS03555 (CHBNIV1_06720) | - | 706827..707114 (-) | 288 | WP_005694353.1 | DUF5339 domain-containing protein | - |
| K6J73_RS03560 (CHBNIV1_06730) | xerD | 707287..708180 (-) | 894 | WP_054456882.1 | site-specific tyrosine recombinase XerD | - |
| K6J73_RS03565 (CHBNIV1_06740) | - | 708211..709377 (-) | 1167 | WP_054456880.1 | 3-phenylpropionate MFS transporter | - |
| K6J73_RS03570 (CHBNIV1_06750) | proC | 709377..710192 (-) | 816 | WP_054456878.1 | pyrroline-5-carboxylate reductase | - |
| K6J73_RS03575 (CHBNIV1_06760) | rdgC | 710258..711166 (+) | 909 | WP_221253444.1 | recombination-associated protein RdgC | - |
| K6J73_RS03580 (CHBNIV1_06770) | ruvX | 711216..711635 (-) | 420 | WP_005648994.1 | Holliday junction resolvase RuvX | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37076.41 Da Isoelectric Point: 4.7793
>NTDB_id=60111 K6J73_RS03550 WP_005649027.1 705768..706775(+) (ruvB) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
Nucleotide
Download Length: 1008 bp
>NTDB_id=60111 K6J73_RS03550 WP_005649027.1 705768..706775(+) (ruvB) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACTCCTAGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCACAAACTTATCGCCATTTTGGTTTGCAGAAATTATCAGACTAG
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACTCCTAGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCACAAACTTATCGCCATTTTGGTTTGCAGAAATTATCAGACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
97.612 |
0.609 |
| ruvB | Streptococcus pneumoniae TIGR4 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
57.975 |
97.313 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
54.633 |
93.433 |
0.51 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
92.239 |
0.507 |