Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J73_RS03545 Genome accession   NZ_AP018780
Coordinates   705146..705760 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-IV-1 isolate 13H36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 700146..710760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J73_RS03520 (CHBNIV1_06650) - 700714..701232 (-) 519 WP_112084373.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J73_RS03525 (CHBNIV1_06660) aspS 701451..703217 (+) 1767 WP_221253438.1 aspartate--tRNA ligase -
  K6J73_RS03530 (CHBNIV1_06670) nudB 703239..703712 (+) 474 WP_221253440.1 dihydroneopterin triphosphate diphosphatase -
  K6J73_RS03535 (CHBNIV1_06680) - 703724..704464 (+) 741 WP_040034319.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J73_RS03540 (CHBNIV1_06690) ruvC 704511..705083 (+) 573 WP_221253442.1 crossover junction endodeoxyribonuclease RuvC -
  K6J73_RS03545 (CHBNIV1_06700) ruvA 705146..705760 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J73_RS03550 (CHBNIV1_06710) ruvB 705768..706775 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J73_RS03555 (CHBNIV1_06720) - 706827..707114 (-) 288 WP_005694353.1 DUF5339 domain-containing protein -
  K6J73_RS03560 (CHBNIV1_06730) xerD 707287..708180 (-) 894 WP_054456882.1 site-specific tyrosine recombinase XerD -
  K6J73_RS03565 (CHBNIV1_06740) - 708211..709377 (-) 1167 WP_054456880.1 3-phenylpropionate MFS transporter -
  K6J73_RS03570 (CHBNIV1_06750) proC 709377..710192 (-) 816 WP_054456878.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=60110 K6J73_RS03545 WP_005659994.1 705146..705760(+) (ruvA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=60110 K6J73_RS03545 WP_005659994.1 705146..705760(+) (ruvA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373