Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU826_RS21210 Genome accession   NZ_CP082280
Coordinates   4502493..4504013 (+) Length   506 a.a.
NCBI ID   WP_058610847.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain HAEC1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4497493..4509013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU826_RS21185 (HU826_21185) - 4499059..4499988 (-) 930 WP_006179207.1 branched-chain amino acid transaminase -
  HU826_RS21190 (HU826_21190) ilvM 4500007..4500270 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  HU826_RS21195 (HU826_21195) ilvG 4500267..4501913 (-) 1647 WP_006179205.1 acetolactate synthase 2 catalytic subunit -
  HU826_RS21200 (HU826_21200) ilvX 4501916..4501966 (-) 51 WP_193749778.1 peptide IlvX -
  HU826_RS21205 (HU826_21205) ilvL 4502053..4502151 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HU826_RS21210 (HU826_21210) comM 4502493..4504013 (+) 1521 WP_058610847.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU826_RS21215 (HU826_21215) - 4504046..4504384 (-) 339 WP_006179202.1 DUF413 domain-containing protein -
  HU826_RS21220 (HU826_21220) hdfR 4504503..4505324 (+) 822 WP_058610848.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54964.09 Da        Isoelectric Point: 7.8531

>NTDB_id=600992 HU826_RS21210 WP_058610847.1 4502493..4504013(+) (comM) [Enterobacter cancerogenus strain HAEC1]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYNFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNASRLGSYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENAAEVSLIAEKGCLVAGHL
QEVCAYLEKRHELAEPEECHDTLPALADDLSDILGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAILSLVNATSLHKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAKFQLVAAMNPSPTGHYQGSHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRHPDARG
ESTAQVRERVIAAQERQYARQGRLNARLDNTGIRQWCPLKTEDAGWLEETLQRFGLSIRAWQRLLKVARTVADMEGCPGI
ERQHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=600992 HU826_RS21210 WP_058610847.1 4502493..4504013(+) (comM) [Enterobacter cancerogenus strain HAEC1]
ATGTCACTGTCAGTTGTCTATACGCGCGCGGCGCTCGGCGTGAAAGCTCCGCTCATTTCCGTTGAGGTGCATTTGAGCAA
CGGTTTACCCGGGCTAACGCTCGTGGGCCTGCCGGAAACGACGGTCAAAGAGGCCCGGGATCGGGTGCGCAGTGCAATTA
TCAATAGCGGTTATAACTTCCCGGCGAAGAAGATCACTATCAACCTCGCCCCAGCCGATTTGCCAAAGGAGGGCGGACGA
TATGATTTACCTATTGCTATCGCGCTTCTCGCCGCCTCTGAGCAGCTTAATGCCTCAAGGTTAGGCTCATATGAGTTCAT
CGGGGAACTGGCGCTTACAGGCGCGCTAAGAGGCGTTCCCGGTGCGATCTCGGGTGCGCTGGAAGCCATCCGCGCAGGAC
GGCAAATCATTGTGGCGAATGAGAATGCAGCAGAAGTTAGCCTCATAGCTGAGAAAGGCTGCCTGGTCGCCGGGCATTTG
CAGGAGGTTTGCGCGTATCTGGAAAAACGGCACGAGCTGGCTGAGCCGGAAGAGTGTCACGACACGCTGCCGGCACTCGC
AGACGATCTGAGCGACATCCTGGGCCAGGAGCAGGGGAAGCGAGCGTTAGAGATTACTGCTGCAGGTGGACATAATCTTT
TGCTCATCGGCCCGCCCGGGACGGGTAAAACCATGCTGGCAAGCAGGCTGAGCGGTTTGCTGCCCCCGCTCAACAACCAT
GAAGCCCTCGAAAGCGCGGCTATTTTAAGCCTGGTCAATGCGACGTCCCTGCACAAACAGTGGCGACGCCGCCCTTTCCG
ATCGCCGCACCACAGCGCCTCTCTCACGGCGATGGTAGGAGGCGGGGCAATCCCGGGGCCAGGTGAAATTTCACTGGCAC
ACAATGGCATACTGTTTCTGGATGAACTGCCGGAATTTGAGCGGCGCGTGCTGGACGCGCTGCGCGAGCCGATAGAGTCG
GGAGAAATTCATATCTCCCGCACGCGGGCCAAAATTAGCTATCCCGCTAAATTTCAGCTGGTTGCGGCAATGAACCCCAG
CCCGACAGGGCATTACCAGGGCAGTCACAACCGCTCGACGCCCGAGCAGACGCTGCGCTATCTGGGAAAACTCTCCGGCC
CCTTTCTCGACCGGTTTGATTTATCTCTTGAGATCCCTCTTCCTCCGCCTGGGCTACTTCGACACCCCGACGCCAGAGGT
GAAAGCACAGCGCAGGTGCGCGAACGGGTTATTGCTGCACAGGAGCGGCAGTACGCGCGTCAGGGTAGGCTCAACGCGCG
TCTTGATAACACGGGTATACGCCAGTGGTGTCCTCTCAAAACCGAAGACGCAGGCTGGCTGGAAGAGACGTTGCAAAGGT
TTGGGCTTTCCATTCGCGCATGGCAGCGCCTGTTGAAAGTGGCAAGAACTGTCGCCGATATGGAGGGATGCCCCGGTATT
GAGAGGCAGCATTTGCAGGAGGCACTGAGCTATCGGGCGATCGATCGCCTGCTTCTTCATCTGCAAAAGCTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.447

100

0.595
  comM Vibrio cholerae strain A1552

58.696

100

0.587
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

50.605

98.024

0.496
  comM Legionella pneumophila strain ERS1305867

50.605

98.024

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.393

100

0.435