Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NDQ64_RS05885 Genome accession   NZ_CP098544
Coordinates   1126806..1127330 (-) Length   174 a.a.
NCBI ID   WP_003688219.1    Uniprot ID   B4RKU5
Organism   Neisseria gonorrhoeae strain 10296     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1121806..1132330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ64_RS05870 (NDQ64_05805) recP/tkt 1121934..1123913 (+) 1980 WP_003688227.1 transketolase Machinery gene
  NDQ64_RS05875 (NDQ64_05810) fumC 1124057..1125445 (+) 1389 WP_003695070.1 class II fumarate hydratase -
  NDQ64_RS05880 (NDQ64_05815) - 1125510..1126433 (-) 924 WP_025455877.1 DMT family transporter -
  NDQ64_RS05885 (NDQ64_05820) ssb 1126806..1127330 (-) 525 WP_003688219.1 single-stranded DNA-binding protein Machinery gene
  NDQ64_RS05890 (NDQ64_05825) - 1127334..1128716 (-) 1383 WP_003688217.1 MFS transporter -
  NDQ64_RS05895 (NDQ64_05830) - 1128828..1129451 (-) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  NDQ64_RS05900 (NDQ64_05835) - 1129953..1130219 (-) 267 Protein_1143 transposase -
  NDQ64_RS05905 (NDQ64_05840) - 1130256..1130746 (-) 491 Protein_1144 transposase -
  NDQ64_RS05910 (NDQ64_05845) - 1131108..1131926 (-) 819 WP_260244312.1 opacity family porin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19475.68 Da        Isoelectric Point: 5.8313

>NTDB_id=600767 NDQ64_RS05885 WP_003688219.1 1126806..1127330(-) (ssb) [Neisseria gonorrhoeae strain 10296]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQNQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=600767 NDQ64_RS05885 WP_003688219.1 1126806..1127330(-) (ssb) [Neisseria gonorrhoeae strain 10296]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAATCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGTCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

99.425

100

0.994
  ssb Neisseria meningitidis MC58

98.276

100

0.983
  ssb Vibrio cholerae strain A1552

47.486

100

0.489
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.454