Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K4O48_RS02335 Genome accession   NZ_CP082271
Coordinates   493324..494388 (+) Length   354 a.a.
NCBI ID   WP_222910582.1    Uniprot ID   -
Organism   Pseudomonas sp. DNDY-54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488324..499388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4O48_RS02325 - 489218..490486 (+) 1269 WP_222910580.1 malic enzyme-like NAD(P)-binding protein -
  K4O48_RS02330 - 490695..493139 (-) 2445 WP_222910581.1 penicillin-binding protein 1A -
  K4O48_RS02335 comM 493324..494388 (+) 1065 WP_222910582.1 pilus assembly protein PilM Machinery gene
  K4O48_RS02340 pilN 494388..494960 (+) 573 WP_222910583.1 type 4a pilus biogenesis protein PilN -
  K4O48_RS02345 pilO 494957..495580 (+) 624 WP_222910584.1 type 4a pilus biogenesis protein PilO -
  K4O48_RS02350 pilP 495577..496104 (+) 528 WP_222910585.1 type 4a pilus biogenesis lipoprotein PilP -
  K4O48_RS02355 pilQ 496156..498252 (+) 2097 WP_222910586.1 type IV pilus secretin PilQ Machinery gene
  K4O48_RS02360 aroK 498260..498805 (+) 546 WP_222910587.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37903.28 Da        Isoelectric Point: 4.6397

>NTDB_id=600682 K4O48_RS02335 WP_222910582.1 493324..494388(+) (comM) [Pseudomonas sp. DNDY-54]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGSRYRVESYAVEPLPPNAVVEKNIAELEGVGQALSRLLAKAKTGVKSAAV
AVSGSAVITKSIEMESGLTDDELENQLKIEADQYIPYPLEEVAIDFEVQGAAARSPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLTPQLGAGHEELTVALVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSM
EEAGLAKKQGGLPDDYDSEVLQPFKEAVVQQVSRSLQFFFAAGQFHDVDYILLAGGTASIQGLDRLIQQKIGTQTLVANP
FADMALSNKVNAGALASDAPSLMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=600682 K4O48_RS02335 WP_222910582.1 493324..494388(+) (comM) [Pseudomonas sp. DNDY-54]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGACATCAGTTCGACGTCCGTCAAGCTACTGGAATT
AAGCCGCTCAGGCTCCCGCTACCGGGTTGAGTCCTATGCGGTCGAGCCGCTTCCGCCAAATGCTGTGGTGGAGAAAAATA
TCGCCGAGCTGGAGGGGGTGGGGCAGGCGTTGTCCCGGTTGCTGGCCAAAGCGAAAACCGGGGTGAAGTCGGCCGCTGTA
GCGGTTTCCGGTTCAGCGGTCATTACCAAAAGCATCGAGATGGAATCGGGTCTGACCGACGATGAGCTGGAGAATCAGCT
CAAGATCGAAGCGGATCAGTACATTCCCTATCCATTGGAAGAAGTCGCTATCGACTTCGAGGTGCAGGGTGCCGCAGCTC
GCTCCCCAGGCCGAGTCGAAGTCCTGTTGGCTGCGTGCCGCAAGGAGAATGTTGAGATCCGCGAGGCAGCGCTCGCCTTG
GCGGGGTTGACGGCTAAGGTAGTCGATGTTGAAGCCTACGCCTTAGAACGCTCCTATGGTCTGCTAACTCCCCAGTTAGG
GGCGGGGCATGAAGAGTTGACTGTGGCGCTGGTGGATATAGGTGCGACCATGACGACTCTGAGCGTGCTGCATAACGGTA
GAACAATCTATACGCGAGAGCAGTTGTTCGGTGGCCGCCAGCTGACAGAAGAAATCCAGCGCCGCTACGGTCTGTCGATG
GAAGAGGCTGGACTGGCTAAAAAGCAGGGCGGGCTTCCAGATGACTACGACAGCGAAGTGTTGCAGCCGTTCAAAGAAGC
CGTCGTTCAACAAGTTTCTCGCTCGCTGCAGTTCTTTTTTGCCGCCGGCCAATTTCATGACGTGGATTACATTCTTCTCG
CCGGCGGCACGGCTTCGATTCAAGGACTGGATCGTTTGATTCAGCAGAAAATCGGAACCCAGACTCTAGTTGCCAACCCC
TTCGCCGATATGGCCTTGAGTAACAAGGTCAACGCGGGTGCGCTTGCCAGCGATGCGCCGTCTCTGATGATTGCCTGTGG
GTTGGCCTTAAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475