Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K4042_RS18875 Genome accession   NZ_CP082269
Coordinates   3905558..3906097 (-) Length   179 a.a.
NCBI ID   WP_144816727.1    Uniprot ID   -
Organism   Enterobacter sp. C2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3900558..3911097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4042_RS18850 - 3901330..3901998 (-) 669 WP_144816718.1 glutathione S-transferase -
  K4042_RS18855 soxR 3902289..3902759 (-) 471 WP_144816721.1 redox-sensitive transcriptional activator SoxR -
  K4042_RS18860 soxS 3902846..3903169 (+) 324 WP_222889016.1 superoxide response transcriptional regulator SoxS -
  K4042_RS18865 - 3903180..3904745 (-) 1566 WP_222889017.1 EAL domain-containing protein -
  K4042_RS18870 - 3905212..3905493 (+) 282 WP_222889018.1 YjcB family protein -
  K4042_RS18875 ssb 3905558..3906097 (-) 540 WP_144816727.1 single-stranded DNA-binding protein SSB1 Machinery gene
  K4042_RS18880 uvrA 3906359..3909184 (+) 2826 WP_144816729.1 excinuclease ABC subunit UvrA -
  K4042_RS18885 - 3909185..3909538 (-) 354 WP_144816731.1 MmcQ/YjbR family DNA-binding protein -
  K4042_RS18890 - 3909535..3909957 (-) 423 WP_144816734.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  K4042_RS18895 aphA 3910063..3910773 (-) 711 WP_222889019.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19133.15 Da        Isoelectric Point: 5.2456

>NTDB_id=600654 K4042_RS18875 WP_144816727.1 3905558..3906097(-) (ssb) [Enterobacter sp. C2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQGGGQQGGWGQPQQPQGGNQNQFSGGAQQRPQQS
TPAPSNNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=600654 K4042_RS18875 WP_144816727.1 3905558..3906097(-) (ssb) [Enterobacter sp. C2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
GGGCGCAGTAGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAGGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGTGCCCTGCGCACCCGCAAATGGACCGATCAGTCCGGCGTGGAAAAATACACCACTGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGTGGCGGTGCACCGGCAGGCGGTCAGCAGGGCGGTGGCCAGCAGGGCG
GTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGAACCAGTTCAGCGGCGGCGCACAGCAGCGTCCGCAGCAGTCC
ACTCCGGCACCGTCTAACAACGAGCCGCCGATGGACTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.527

100

0.737
  ssb Glaesserella parasuis strain SC1401

56.044

100

0.57
  ssb Neisseria meningitidis MC58

45.355

100

0.464
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.464
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.912

100

0.385