Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDQ65_RS10965 Genome accession   NZ_CP098538
Coordinates   2075750..2076718 (-) Length   322 a.a.
NCBI ID   WP_010359689.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain ATCC 49226     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2070750..2081718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ65_RS10940 (NDQ65_10885) - 2071293..2072600 (-) 1308 WP_048589563.1 YadA-like family protein -
  NDQ65_RS10945 (NDQ65_10890) - 2072586..2073238 (+) 653 Protein_2098 IS1595 family transposase -
  NDQ65_RS10950 (NDQ65_10895) - 2073273..2074031 (-) 759 WP_003696519.1 ABC transporter ATP-binding protein -
  NDQ65_RS10955 (NDQ65_10900) - 2074115..2074741 (-) 627 WP_003690385.1 FmdE family protein -
  NDQ65_RS10960 (NDQ65_10905) - 2074786..2075760 (-) 975 WP_010359688.1 iron chelate uptake ABC transporter family permease subunit -
  NDQ65_RS10965 (NDQ65_10910) ceuB 2075750..2076718 (-) 969 WP_010359689.1 ABC transporter permease Machinery gene
  NDQ65_RS10970 (NDQ65_10915) - 2076737..2076928 (-) 192 WP_162488780.1 hypothetical protein -
  NDQ65_RS10975 (NDQ65_10920) - 2076946..2077911 (-) 966 WP_010359690.1 siderophore ABC transporter substrate-binding protein -
  NDQ65_RS10980 (NDQ65_10925) fetA 2078063..2080204 (-) 2142 WP_010356155.1 TonB-dependent siderophore receptor FetA/FrpB -
  NDQ65_RS10985 (NDQ65_10930) - 2080707..2080997 (+) 291 WP_002214868.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34406.67 Da        Isoelectric Point: 10.0891

>NTDB_id=600654 NDQ65_RS10965 WP_010359689.1 2075750..2076718(-) (ceuB) [Neisseria gonorrhoeae strain ATCC 49226]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=600654 NDQ65_RS10965 WP_010359689.1 2075750..2076718(-) (ceuB) [Neisseria gonorrhoeae strain ATCC 49226]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388