Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6751_RS00930 Genome accession   NZ_CP082244
Coordinates   190802..192295 (-) Length   497 a.a.
NCBI ID   WP_107328731.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain CSMC7.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 185802..197295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6751_RS00920 (K6751_00920) - 186702..188678 (+) 1977 WP_044400761.1 methyl-accepting chemotaxis protein -
  K6751_RS00925 (K6751_00925) - 188719..190695 (-) 1977 WP_222900667.1 BCCT family transporter -
  K6751_RS00930 (K6751_00930) comM 190802..192295 (-) 1494 WP_107328731.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6751_RS00935 (K6751_00935) - 192333..192596 (-) 264 WP_044400771.1 accessory factor UbiK family protein -
  K6751_RS00940 (K6751_00940) glnK 193007..193345 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  K6751_RS00945 (K6751_00945) - 193380..194699 (+) 1320 WP_044400778.1 ammonium transporter -
  K6751_RS00950 (K6751_00950) - 194817..195242 (+) 426 WP_044400781.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  K6751_RS00955 (K6751_00955) sutA 195318..195638 (+) 321 WP_074966975.1 transcriptional regulator SutA -
  K6751_RS00960 (K6751_00960) - 195696..196400 (-) 705 WP_222900668.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52650.49 Da        Isoelectric Point: 7.4046

>NTDB_id=600490 K6751_RS00930 WP_107328731.1 190802..192295(-) (comM) [Metapseudomonas otitidis strain CSMC7.1]
MSLALVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSALLTSGFEFPLRRITLSLAPADLPKEGGR
FDLAVALGILAASGQVPAAALEQLECLGELALSGALRPVQGVLPAALAARAAGRALVVPRENAEEASLASGLTVFAVGHL
LELAAHLNGQSPLAPFQSQGLPLQAAPYPDLADVQGQLAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLEE
HEALEVAAIHSVASQSPLACWPQRPFRQPHHSASGPALVGGGSRPKPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIIIARANDRVRFPARFQLVAAMNPCPCGYLGDETHRCRCTPEQIQRYRARLSGPLLDRIDLHLTVAREATHLGAPVSG
GLDSATAAGEVGRARRRQLARQGCANAFLDLSRLHQHCPLTPDDQHWLEQACERLGLSLRAAHRLIKVARTLADLADAPD
IQRHHLAEALQYRPTSS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=600490 K6751_RS00930 WP_107328731.1 190802..192295(-) (comM) [Metapseudomonas otitidis strain CSMC7.1]
ATGTCCCTGGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGGAAGCCCCCGCCGTCACGGTGGAGGCGCACCTGGCCAA
CGGCCTGCCGTCCCTGGCCTTGGTCGGCCTCCCGGAAACCGCCGTGAAGGAGAGCAAGGACCGCGTCCGCAGCGCCCTGC
TCACCAGCGGTTTCGAATTCCCCCTGCGGCGCATCACCCTCAGCCTTGCACCAGCCGATCTTCCCAAGGAAGGCGGACGC
TTCGACCTGGCCGTCGCCCTCGGCATCCTCGCGGCCAGCGGCCAGGTGCCCGCCGCTGCCCTGGAGCAGCTGGAGTGCCT
CGGCGAACTGGCCCTATCCGGTGCCCTGCGCCCGGTGCAGGGTGTGTTGCCCGCTGCGCTGGCGGCTCGCGCTGCCGGAC
GGGCGCTGGTGGTGCCCCGGGAAAACGCCGAGGAGGCCAGCCTGGCCAGCGGCCTGACGGTGTTCGCCGTGGGTCACCTG
CTGGAGCTGGCCGCCCACCTCAACGGCCAGTCGCCGCTGGCACCCTTCCAGAGCCAGGGCCTGCCGCTGCAGGCCGCGCC
CTACCCCGATCTCGCTGACGTCCAGGGCCAACTGGCAGCCAAGCGCGCGCTGCTGGTGGCCGCCGCCGGAGCCCACAACC
TGCTGCTGTCCGGCCCGCCCGGCACCGGCAAGACCTTGCTGGCCAGCCGCCTGCCGGGCCTGCTGCCACCGCTGGAGGAG
CACGAGGCTCTGGAAGTGGCCGCCATCCATTCGGTGGCCAGCCAATCACCGCTGGCGTGCTGGCCCCAGCGTCCCTTCAG
GCAGCCTCACCACAGCGCGTCCGGCCCGGCCCTGGTGGGTGGGGGCAGTCGTCCGAAACCCGGCGAGATCACCCTGGCGC
ACCAGGGTGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTCCTCCGAGAGCCCCTGGAAAGC
GGCGAGATCATCATCGCCCGGGCCAATGACCGGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACGAGACCCACCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGGGCCCGGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACGGTCGCCCGCGAAGCCACACACCTGGGCGCGCCCGTCAGCGGC
GGGCTCGACAGTGCCACCGCTGCCGGGGAAGTCGGACGAGCCCGGCGTCGGCAACTGGCTCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGTCCCGGCTGCACCAGCACTGTCCGCTGACGCCCGACGACCAGCATTGGCTGGAGCAGGCCTGCGAAC
GCCTCGGGTTGTCCCTGCGTGCCGCGCACCGGCTGATCAAGGTGGCCCGCACCCTCGCCGACCTGGCGGACGCGCCCGAC
ATCCAGCGCCACCACCTGGCCGAGGCCCTGCAGTACCGGCCGACCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.74

100

0.567
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Glaesserella parasuis strain SC1401

55.268

100

0.559
  comM Haemophilus influenzae Rd KW20

55.09

100

0.555
  comM Legionella pneumophila str. Paris

50

100

0.509
  comM Legionella pneumophila strain ERS1305867

50

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459