Detailed information NTG0600408

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: K7B00_RS12500
• Genome accession: NZ_CP082238
• Coordinates: 2456210..2456911 (+)
• Length: 233 a.a.
• NCBI ID: WP_074874161.1
• Uniprot ID: -
• Organism: Acidithiobacillus ferrooxidans strain BYM
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2451210..2461911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7B00_RS12480 (K7B00_12480)	-	2451595..2452671 (-)	1077	WP_111122573.1	TniQ family protein	-
K7B00_RS12485 (K7B00_12485)	-	2452686..2453573 (-)	888	WP_041646474.1	TniB family NTP-binding protein	-
K7B00_RS12490 (K7B00_12490)	-	2453570..2455450 (-)	1881	WP_012607455.1	Mu transposase C-terminal domain-containing protein	-
K7B00_RS12495 (K7B00_12495)	-	2455443..2456132 (-)	690	WP_012537231.1	heteromeric transposase endonuclease subunit TnsA	-
K7B00_RS12500 (K7B00_12500)	comM	2456210..2456911 (+)	702	WP_074874161.1	ATP-binding protein	Machinery gene
K7B00_RS12505 (K7B00_12505)	-	2457058..2457435 (-)	378	WP_012537232.1	DsrE family protein	-
K7B00_RS12510 (K7B00_12510)	-	2457677..2458159 (-)	483	WP_009561598.1	MerR family transcriptional regulator	-
K7B00_RS12515 (K7B00_12515)	-	2458205..2458438 (-)	234	WP_009561599.1	hypothetical protein	-
K7B00_RS12525 (K7B00_12525)	-	2458973..2459497 (-)	525	WP_009561601.1	tetratricopeptide repeat protein	-
K7B00_RS12530 (K7B00_12530)	-	2459525..2461144 (-)	1620	WP_012537233.1	peptide chain release factor 3	-
K7B00_RS12535 (K7B00_12535)	rimI	2461151..2461627 (-)	477	WP_012537234.1	ribosomal protein S18-alanine N-acetyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 25852.47 Da
• Isoelectric Point: 7.7885

>NTDB_id=600408 K7B00_RS12500 WP_074874161.1 2456210..2456911(+) (comM) [Acidithiobacillus ferrooxidans strain BYM]
MVHSVALIGRSHSGSHPRPGEISLAHHGVLFLDEMPEFPRAVLEVLREPLESGEIHIARAARRATFPARFQLVAAMNPCP
CGHLGDPQQICRCTPAQVSQYRSRLSGPLLDRIDIQMEVPALPVSALQEAGPGESSAYWRERIAQAVDRQWQRQQVRNAQ
LQGELLDQFCALDTVGTRLLSRATETLHLSARGYHRVLRVARSIADLEGSDPIGTQHLAEAIQYRRLAQTLAQ

Nucleotide

• Length: 702 bp

>NTDB_id=600408 K7B00_RS12500 WP_074874161.1 2456210..2456911(+) (comM) [Acidithiobacillus ferrooxidans strain BYM]
ATGGTTCATAGTGTAGCATTAATTGGTAGAAGTCACAGTGGTTCGCACCCTCGCCCCGGTGAAATCAGTCTGGCACATCA
TGGCGTTCTTTTCCTGGACGAAATGCCCGAGTTCCCTCGCGCGGTGCTGGAAGTCCTGCGGGAGCCGTTGGAATCGGGAG
AAATCCATATCGCCAGGGCGGCGCGGCGGGCCACTTTTCCAGCCCGGTTTCAGTTGGTCGCCGCGATGAATCCCTGTCCC
TGCGGCCATCTCGGTGATCCGCAGCAGATATGCCGCTGTACCCCGGCACAGGTCAGCCAATACCGCAGTCGGCTCTCCGG
CCCGCTGCTGGACCGCATCGACATCCAGATGGAAGTGCCCGCCCTGCCGGTAAGCGCCTTACAAGAGGCGGGACCAGGCG
AAAGTTCTGCCTACTGGCGCGAACGCATAGCTCAGGCCGTTGATCGCCAGTGGCAGCGGCAGCAGGTGCGCAATGCACAA
CTTCAGGGCGAACTGCTGGATCAGTTTTGCGCTCTGGATACGGTGGGCACCCGCCTGCTCAGCCGCGCCACCGAGACCCT
GCACCTCTCCGCGCGGGGCTACCATCGGGTGCTGCGCGTCGCCCGCAGTATCGCGGATCTGGAAGGGAGTGATCCGATCG
GTACCCAGCATCTGGCAGAAGCCATCCAGTATCGCCGCCTGGCGCAGACGCTGGCCCAATGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (4-124)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (133-225)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	50.862	99.571	0.506
comM	Vibrio cholerae strain A1552	50.431	99.571	0.502
comM	Haemophilus influenzae Rd KW20	48.936	100	0.494
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	49.351	99.142	0.489
comM	Glaesserella parasuis strain SC1401	48.918	99.142	0.485
comM	Legionella pneumophila strain ERS1305867	49.107	96.137	0.472
comM	Legionella pneumophila str. Paris	49.107	96.137	0.472