Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   K6969_RS04150 Genome accession   NZ_CP082205
Coordinates   833194..834126 (+) Length   310 a.a.
NCBI ID   WP_171942568.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 828194..839126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS04130 (K6969_04065) - 828884..829495 (+) 612 WP_171942564.1 DUF3885 domain-containing protein -
  K6969_RS04135 (K6969_04070) - 829577..830326 (+) 750 WP_171942565.1 hypothetical protein -
  K6969_RS04140 (K6969_04075) metG 830534..832537 (+) 2004 WP_171942566.1 methionine--tRNA ligase -
  K6969_RS04145 (K6969_04080) - 832566..833132 (-) 567 WP_171942567.1 GNAT family N-acetyltransferase -
  K6969_RS04150 (K6969_04085) coiA 833194..834126 (+) 933 WP_171942568.1 competence protein CoiA Machinery gene
  K6969_RS04155 (K6969_04090) pepF 834364..836166 (+) 1803 WP_171942569.1 oligoendopeptidase F Regulator
  K6969_RS04160 (K6969_04095) - 836168..836611 (+) 444 WP_171942570.1 hypothetical protein -
  K6969_RS04165 (K6969_04100) - 836622..837170 (+) 549 WP_171942571.1 DUF6630 family protein -
  K6969_RS04170 (K6969_04105) - 837245..837964 (+) 720 WP_171942572.1 O-methyltransferase -
  K6969_RS04175 (K6969_04110) prsA 838028..839029 (+) 1002 WP_044689579.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35753.47 Da        Isoelectric Point: 8.8758

>NTDB_id=600047 K6969_RS04150 WP_171942568.1 833194..834126(+) (coiA) [Streptococcus suis strain AKJ18]
MLVALDEDGQVFNVLENPAPQGSFTCPVCGGLVRYKSGKVLRSHFAHVSLRDCSYFSENESAQHLSLKSSLYNWLAKNEL
VELEKCLPKIGQVADLLVNNSLALEVQCSSLPITRLQARTIAYHVAGYQVVWLLGKDLWLKGRLTNLHKQFLSFSMNMGF
HLWELDDEKNELRLRYLIHEDLRGKVHCLTKTFPFGQGNLLDILRLPFSKQTLSSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAVAYGRGENLLTKTALDWYPHYRLPRSAIGFAQIKQDLTPIYQAFDLFYDKAKEKRKQILYPPIMYR

Nucleotide


Download         Length: 933 bp        

>NTDB_id=600047 K6969_RS04150 WP_171942568.1 833194..834126(+) (coiA) [Streptococcus suis strain AKJ18]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTACTTGTCC
AGTTTGTGGAGGCCTGGTCCGATACAAGTCCGGAAAGGTTCTGCGTTCGCACTTTGCCCATGTTTCCCTGCGGGATTGTA
GTTACTTCTCCGAGAATGAGTCCGCCCAGCACCTGTCACTTAAGTCCAGTCTCTATAACTGGTTGGCTAAAAACGAACTG
GTTGAACTTGAAAAATGCCTGCCAAAGATTGGCCAGGTCGCTGATTTATTGGTCAATAATAGTCTGGCCTTGGAAGTTCA
ATGTTCTAGCCTCCCCATTACTCGTTTGCAGGCGAGAACAATAGCCTATCATGTTGCAGGTTATCAGGTTGTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGGACGACTGACCAATTTGCACAAGCAATTTCTCTCCTTTAGTATGAACATGGGTTTT
CATCTGTGGGAGTTGGATGATGAGAAGAATGAGTTAAGACTTCGTTATCTCATTCATGAAGACTTGCGAGGCAAGGTGCA
TTGTCTGACCAAGACCTTTCCCTTTGGTCAGGGAAACTTACTGGATATATTACGTTTACCTTTTTCCAAGCAAACCCTAT
CTAGTATGACTTGTCCAATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCCCTACAAGCAGTGGCTTATGGACGTGGAGAAAATCTACTAACCAAGACAGCACTAGACTGGTATCCCCACTATCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATCAAACAAGACCTGACACCGATTTACCAAGCATTTGATCTATTTTACGACA
AAGCAAAAGAAAAGAGAAAACAAATCTTGTATCCACCTATAATGTATAGATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.09

100

0.523
  coiA Streptococcus pneumoniae TIGR4

51.768

100

0.519
  coiA Streptococcus pneumoniae Rx1

51.768

100

0.519
  coiA Streptococcus pneumoniae D39

51.768

100

0.519
  coiA Streptococcus pneumoniae R6

51.768

100

0.519
  coiA Lactococcus lactis subsp. cremoris KW2

42.188

100

0.435