Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K6969_RS04155 Genome accession   NZ_CP082205
Coordinates   834364..836166 (+) Length   600 a.a.
NCBI ID   WP_171942569.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 829364..841166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS04135 (K6969_04070) - 829577..830326 (+) 750 WP_171942565.1 hypothetical protein -
  K6969_RS04140 (K6969_04075) metG 830534..832537 (+) 2004 WP_171942566.1 methionine--tRNA ligase -
  K6969_RS04145 (K6969_04080) - 832566..833132 (-) 567 WP_171942567.1 GNAT family N-acetyltransferase -
  K6969_RS04150 (K6969_04085) coiA 833194..834126 (+) 933 WP_171942568.1 competence protein CoiA Machinery gene
  K6969_RS04155 (K6969_04090) pepF 834364..836166 (+) 1803 WP_171942569.1 oligoendopeptidase F Regulator
  K6969_RS04160 (K6969_04095) - 836168..836611 (+) 444 WP_171942570.1 hypothetical protein -
  K6969_RS04165 (K6969_04100) - 836622..837170 (+) 549 WP_171942571.1 DUF6630 family protein -
  K6969_RS04170 (K6969_04105) - 837245..837964 (+) 720 WP_171942572.1 O-methyltransferase -
  K6969_RS04175 (K6969_04110) prsA 838028..839029 (+) 1002 WP_044689579.1 peptidylprolyl isomerase PrsA -
  K6969_RS04180 (K6969_04115) - 839390..839875 (+) 486 WP_171942573.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69188.32 Da        Isoelectric Point: 4.5314

>NTDB_id=600048 K6969_RS04155 WP_171942569.1 834364..836166(+) (pepF) [Streptococcus suis strain AKJ18]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIENLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVTAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=600048 K6969_RS04155 WP_171942569.1 834364..836166(+) (pepF) [Streptococcus suis strain AKJ18]
ATGTCTAAACAACGTTATGAAATTGAAGAAAAATACCAGTGGGACTTGACCACAATTTTCCCAACAGATGAGGCTTGGGA
AGCAGAATTGGCTGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTCGGTCTCATGCGCCGCATTGAAAACCTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGCAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCTATCACTGAAGAGCAGTTGGAAGCCTTTAAGGTAGAAGAGCCTGCTCTTGTTCAGT
ATAGTCACCAATTTGAAAAGCTTCTGGCGGCCAAGGACCATGTCCTGTCACAAGAGGTAGAAGAAGTCCTTGCAGCGACT
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGTCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTACCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGTCAAGAAG
CATACGAAGCAATGTACGGTACCTACGAGCAGTTCCAGCATACCTACGCTAAGACCCTTCAGTCTAACGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGACGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCTTGGGTA
TTGATGATTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGTACCAAGATTTCATACGAAGATGCACTAAAA
AAATGTCAAGAAACCTTGGAAATCTTTGGTGAAGATTACTCTGCTATCGTAAAAGAAGCCTTTGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTATGATACCAACGCCTTCATGCTCCTCAACT
GGCAGGACAATTTGGACAACATGTACACTCTTATCCATGAAACAGGCCACTCTCTTCATTCCATGTTGACTCGTAAGACG
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTGGCTGAAATTGCGTCAACAACCAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGCGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTTGCGGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTAAAGGCTGGTAGCTCAGATTACTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAGGCTCGTTT
GGAAGAATTAGAAGCTCTAGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.5

100

0.695