Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   K6974_RS09070 Genome accession   NZ_CP082204
Coordinates   1803633..1804574 (-) Length   313 a.a.
NCBI ID   WP_222336711.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798633..1809574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS09045 (K6974_08960) - 1799257..1799976 (-) 720 WP_222336707.1 O-methyltransferase -
  K6974_RS09050 (K6974_08965) - 1800051..1800599 (-) 549 WP_024378431.1 DUF6630 family protein -
  K6974_RS09055 (K6974_08970) - 1800610..1801056 (-) 447 WP_222336708.1 hypothetical protein -
  K6974_RS09060 (K6974_08975) pepF 1801058..1802860 (-) 1803 WP_222336709.1 oligoendopeptidase F Regulator
  K6974_RS09065 (K6974_08980) - 1802933..1803589 (-) 657 WP_222336710.1 hypothetical protein -
  K6974_RS09070 (K6974_08985) coiA 1803633..1804574 (-) 942 WP_222336711.1 competence protein CoiA Machinery gene
  K6974_RS09075 (K6974_08990) - 1804636..1805202 (+) 567 WP_222336712.1 GNAT family N-acetyltransferase -
  K6974_RS09080 (K6974_08995) metG 1805233..1807236 (-) 2004 WP_222336713.1 methionine--tRNA ligase -
  K6974_RS09085 (K6974_09000) - 1807391..1808200 (-) 810 WP_261311647.1 hypothetical protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36063.91 Da        Isoelectric Point: 8.7146

>NTDB_id=599996 K6974_RS09070 WP_222336711.1 1803633..1804574(-) (coiA) [Streptococcus suis strain FJSM5]
MLVALDEDGQVFNVLENPAPQGSFTCPVCGGLVRYKSGKVMRSHFAHVSLRDCSYFSENESAQHLSLKSSLYNWLAKNEL
VELEKCLPKIGQVADLLVNNSLALEVQCSSLPITRLQARTIAYHVAGYQVVWLLGKDLWLKGRLTNLHKQFLSFSMNMGF
HLWELDDEKNELRLRYLIHEDLRGKVHCLTRVFPFGQGNLLDILRLPFSKQTLTSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAEAYGRGENLLIKTALDFYPQIRLPRSAIGFAQIKQDLTPIYQAFDLFYDKAKDKRKQILYPPIIYRQLV

Nucleotide


Download         Length: 942 bp        

>NTDB_id=599996 K6974_RS09070 WP_222336711.1 1803633..1804574(-) (coiA) [Streptococcus suis strain FJSM5]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTACTTGTCC
AGTTTGTGGAGGCCTGGTCCGATACAAGTCCGGAAAGGTTATGCGTTCGCACTTTGCCCATGTTTCCCTGCGGGATTGTA
GTTACTTCTCCGAGAATGAGTCCGCCCAGCACCTGTCACTTAAGTCCAGTCTCTATAACTGGTTGGCTAAAAACGAACTG
GTTGAACTTGAAAAATGCCTGCCAAAGATTGGCCAGGTCGCTGATTTATTGGTCAATAATAGTCTGGCCTTGGAAGTTCA
ATGTTCTAGCCTCCCCATTACTCGTTTGCAGGCGAGAACAATAGCCTATCATGTTGCAGGTTATCAGGTTGTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGGACGACTGACCAATTTGCACAAGCAATTTCTCTCCTTTAGTATGAACATGGGTTTT
CATCTGTGGGAGTTAGATGATGAGAAGAATGAGTTAAGACTTCGTTACCTCATTCATGAAGACTTGCGGGGTAAGGTACA
CTGTCTTACGAGAGTCTTTCCCTTTGGTCAGGGAAACTTACTGGATATATTACGTTTACCTTTTTCCAAGCAAACCCTAA
CTAGCATGACTTGTCCAATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCCCTGCAAGCAGAGGCTTATGGACGTGGAGAAAATCTACTGATCAAGACAGCATTAGACTTTTATCCCCAAATCCGACT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATCAAACAAGACCTGACACCGATTTACCAAGCATTTGATCTGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATAATTTATAGACAACTTGTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.923

99.681

0.518
  coiA Streptococcus pneumoniae TIGR4

51.603

99.681

0.514
  coiA Streptococcus pneumoniae Rx1

51.603

99.681

0.514
  coiA Streptococcus pneumoniae D39

51.603

99.681

0.514
  coiA Streptococcus pneumoniae R6

51.603

99.681

0.514
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428