Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K6974_RS09060 Genome accession   NZ_CP082204
Coordinates   1801058..1802860 (-) Length   600 a.a.
NCBI ID   WP_222336709.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796058..1807860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS09035 (K6974_08950) - 1797367..1797852 (-) 486 WP_004299022.1 LURP-one-related/scramblase family protein -
  K6974_RS09040 (K6974_08955) prsA 1798214..1799194 (-) 981 WP_099778615.1 peptidylprolyl isomerase PrsA -
  K6974_RS09045 (K6974_08960) - 1799257..1799976 (-) 720 WP_222336707.1 O-methyltransferase -
  K6974_RS09050 (K6974_08965) - 1800051..1800599 (-) 549 WP_024378431.1 DUF6630 family protein -
  K6974_RS09055 (K6974_08970) - 1800610..1801056 (-) 447 WP_222336708.1 hypothetical protein -
  K6974_RS09060 (K6974_08975) pepF 1801058..1802860 (-) 1803 WP_222336709.1 oligoendopeptidase F Regulator
  K6974_RS09065 (K6974_08980) - 1802933..1803589 (-) 657 WP_222336710.1 hypothetical protein -
  K6974_RS09070 (K6974_08985) coiA 1803633..1804574 (-) 942 WP_222336711.1 competence protein CoiA Machinery gene
  K6974_RS09075 (K6974_08990) - 1804636..1805202 (+) 567 WP_222336712.1 GNAT family N-acetyltransferase -
  K6974_RS09080 (K6974_08995) metG 1805233..1807236 (-) 2004 WP_222336713.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69146.24 Da        Isoelectric Point: 4.5294

>NTDB_id=599995 K6974_RS09060 WP_222336709.1 1801058..1802860(-) (pepF) [Streptococcus suis strain FJSM5]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKSEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=599995 K6974_RS09060 WP_222336709.1 1801058..1802860(-) (pepF) [Streptococcus suis strain FJSM5]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGACTTGACCACCATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAGCTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTTAAGTCAGAGGAGCCTGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTTTGGCAGCCAAAGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGTCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACCTACGCTAAGACTCTGCAATCTAATGTTAAGGTCAAT
AACCTGAAAGCACGTTTACGGAAGTACGACTCAGCTCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACGCCATTGTCAGATTTCAGCACCAAGATTTCATACGAAGATGCTCTAAAA
AAATGCCAAGAAACCTTGGAAATCTTTGGTGAAGATTATTCGGCTATTGTCAAAGAAGCTTTTGAAAACCGCTGGATTGA
TGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGCCACTCCCTCCATTCGATGTTGACCCGTCAGACA
CAGCCATATGTCTATGGTCATTATTCACTCTTCTTGGCTGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAGCAAGCTATCTATAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTAAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTCGCGGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698