Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   K6974_RS02680 Genome accession   NZ_CP082204
Coordinates   497799..498464 (+) Length   221 a.a.
NCBI ID   WP_105146034.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 492799..503464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS02655 (K6974_02635) - 492895..493245 (+) 351 WP_044766575.1 phage holin -
  K6974_RS02660 (K6974_02640) - 493229..493915 (+) 687 WP_222337540.1 CHAP domain-containing protein -
  K6974_RS02665 (K6974_02645) - 494553..495674 (-) 1122 WP_015445098.1 IS110 family transposase -
  K6974_RS02670 (K6974_02650) - 495825..496457 (-) 633 WP_015646510.1 YigZ family protein -
  K6974_RS02675 (K6974_02655) comFA/cflA 496514..497806 (+) 1293 WP_222337504.1 DEAD/DEAH box helicase Machinery gene
  K6974_RS02680 (K6974_02660) comFC/cflB 497799..498464 (+) 666 WP_105146034.1 ComF family protein Machinery gene
  K6974_RS02685 (K6974_02665) hpf 498541..499083 (+) 543 WP_002941735.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25760.65 Da        Isoelectric Point: 8.4541

>NTDB_id=599983 K6974_RS02680 WP_105146034.1 497799..498464(+) (comFC/cflB) [Streptococcus suis strain FJSM5]
MSNCLLCAQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLLERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=599983 K6974_RS02680 WP_105146034.1 497799..498464(+) (comFC/cflB) [Streptococcus suis strain FJSM5]
ATGTCTAATTGTCTATTGTGCGCCCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGTATATGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATTAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48