Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   K6972_RS10505 Genome accession   NZ_CP082203
Coordinates   2176801..2177997 (+) Length   398 a.a.
NCBI ID   WP_136581680.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2171801..2182997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS10475 (K6972_10475) - 2172459..2175038 (+) 2580 WP_222759538.1 YfhO family protein -
  K6972_RS10495 (K6972_10495) - 2175440..2176123 (-) 684 WP_053867304.1 YoaK family protein -
  K6972_RS10500 (K6972_10500) rlmH 2176148..2176627 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  K6972_RS10505 (K6972_10505) htrA 2176801..2177997 (+) 1197 WP_136581680.1 S1C family serine protease Regulator
  K6972_RS10510 (K6972_10510) spo0J 2178058..2178822 (+) 765 WP_099833035.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41880.91 Da        Isoelectric Point: 4.4971

>NTDB_id=599958 K6972_RS10505 WP_136581680.1 2176801..2177997(+) (htrA) [Streptococcus suis strain NJ3]
MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPQVQQANSAITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGAIFGNIESSDELAVAGEGSGVIYKKDGQYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTTVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSEDGQTISTNAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKITSSSVSSSGVAVEGMGFAIPANDAVAIINQLEKDGKVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGEAIQNKSDLQSALYKHQIGDTITITYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=599958 K6972_RS10505 WP_136581680.1 2176801..2177997(+) (htrA) [Streptococcus suis strain NJ3]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTCTATTTGTAATTGGATTTTTTGGGGGTCTTATCGG
GGCCTTATCAGCCTCTTTCTTCCAACCACAGGTTCAACAAGCAAATTCTGCTATCACTAGTGTCAGCAATGTTCAATATA
ATAATGAAACTTCCACCACAAAAGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAGTCAGCC
AACAATAGTCTTGGTGCTATCTTTGGAAATATTGAATCATCTGACGAACTAGCTGTTGCTGGAGAGGGGTCTGGGGTTAT
CTATAAAAAAGATGGTCAATATGCCTATATTGTGACAAATACACATGTTATTAATAACGCAGAAAAAATTGATATTCTTT
TAGCATCTGGAGAAAAAATCAGCGGTGAACTCGTTGGTTCCGATACCTATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTACTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
TCTAGGTAGTGTCTACGCCAATACAGTTACTCAAGGTATTATTTCCAGCCTAAGTCGGACAGTTACTTCACAATCAGAAG
ACGGACAAACAATCTCAACCAATGCTATTCAAACCGATACAGCTATCAACCCAGGAAACTCTGGAGGACCATTGATTAAT
ATACAAGGACAAGTTATTGGTATCACCTCTAGCAAAATCACCTCAAGTTCTGTAAGTAGCTCAGGTGTGGCTGTGGAAGG
GATGGGATTTGCTATTCCTGCAAATGATGCCGTAGCTATTATCAATCAACTTGAAAAAGATGGAAAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTGGAAAAAGCTGGATTATCAAATACGGAATTA
ACATCTGGTGTAGTAATTGTCTCTACACAAAGTGGGCTACCTGCAGATGGAAAATTAGAAACTTTTGATGTTATTACTGA
GATTGACGGAGAAGCTATTCAAAATAAGAGTGATCTACAGAGCGCTCTCTACAAACATCAAATTGGAGATACAATCACTA
TAACTTATTACCGCAACAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGCGAATAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(103-248)

PDZ domain (PDZ_2)

(293-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

60.705

99.749

0.606
  htrA Streptococcus gordonii str. Challis substr. CH1

60.253

99.246

0.598
  htrA Streptococcus pneumoniae D39

58.015

98.744

0.573
  htrA Streptococcus pneumoniae TIGR4

58.015

98.744

0.573
  htrA Streptococcus mitis NCTC 12261

58.015

98.744

0.573
  htrA Streptococcus pneumoniae R6

58.015

98.744

0.573
  htrA Streptococcus pneumoniae Rx1

58.015

98.744

0.573