Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   K6976_RS07260 Genome accession   NZ_CP082202
Coordinates   1479735..1480676 (-) Length   313 a.a.
NCBI ID   WP_222759175.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1474735..1485676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS07235 (K6976_07235) prsA 1474839..1475840 (-) 1002 WP_109371642.1 peptidylprolyl isomerase PrsA -
  K6976_RS07240 (K6976_07240) - 1475903..1476622 (-) 720 WP_043034995.1 O-methyltransferase -
  K6976_RS07245 (K6976_07245) - 1476697..1477245 (-) 549 WP_105212569.1 DUF6630 family protein -
  K6976_RS07250 (K6976_07250) - 1477256..1477702 (-) 447 WP_105212570.1 hypothetical protein -
  K6976_RS07255 (K6976_07255) pepF 1477704..1479506 (-) 1803 WP_105212571.1 oligoendopeptidase F Regulator
  K6976_RS07260 (K6976_07260) coiA 1479735..1480676 (-) 942 WP_222759175.1 competence protein CoiA Machinery gene
  K6976_RS07265 (K6976_07265) metG 1480737..1482740 (-) 2004 WP_222759176.1 methionine--tRNA ligase -
  K6976_RS07270 (K6976_07270) - 1482971..1483720 (-) 750 WP_222759178.1 hypothetical protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36259.83 Da        Isoelectric Point: 7.1699

>NTDB_id=599885 K6976_RS07260 WP_222759175.1 1479735..1480676(-) (coiA) [Streptococcus suis strain SS389]
MLVALDEDGQVFNVLENPAPQGRFCCPGCGGLVRYKSGKVLRSHFAHITLRDCTYFSENESAQHLSLKSCLYSWLINDEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQVRTQAYHEAGLQVLWLLGKGLWLKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQTLSHLTCPLDRDLPCYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLSPVYQDFDQYYDSIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=599885 K6976_RS07260 WP_222759175.1 1479735..1480676(-) (coiA) [Streptococcus suis strain SS389]
ATGTTAGTTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTTTTGCTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCACATAACCCTGCGGGACTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCCCTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGACGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTACA
GTGTTCCAGTCTACCCATTTCTCGTTTGCAGGTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGTTAAAAGAAAGATTAAGCAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCTGCCATTTGCCAAGCAAACATTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTTGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTACAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAAGTCCAGTCTATCAGGATTTTGACCAGTATTACGACA
GTATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425