Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K6976_RS07255 Genome accession   NZ_CP082202
Coordinates   1477704..1479506 (-) Length   600 a.a.
NCBI ID   WP_105212571.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1472704..1484506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS07230 (K6976_07230) - 1474147..1474632 (-) 486 WP_261984102.1 LURP-one-related/scramblase family protein -
  K6976_RS07235 (K6976_07235) prsA 1474839..1475840 (-) 1002 WP_109371642.1 peptidylprolyl isomerase PrsA -
  K6976_RS07240 (K6976_07240) - 1475903..1476622 (-) 720 WP_043034995.1 O-methyltransferase -
  K6976_RS07245 (K6976_07245) - 1476697..1477245 (-) 549 WP_105212569.1 DUF6630 family protein -
  K6976_RS07250 (K6976_07250) - 1477256..1477702 (-) 447 WP_105212570.1 hypothetical protein -
  K6976_RS07255 (K6976_07255) pepF 1477704..1479506 (-) 1803 WP_105212571.1 oligoendopeptidase F Regulator
  K6976_RS07260 (K6976_07260) coiA 1479735..1480676 (-) 942 WP_222759175.1 competence protein CoiA Machinery gene
  K6976_RS07265 (K6976_07265) metG 1480737..1482740 (-) 2004 WP_222759176.1 methionine--tRNA ligase -
  K6976_RS07270 (K6976_07270) - 1482971..1483720 (-) 750 WP_222759178.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69146.33 Da        Isoelectric Point: 4.5717

>NTDB_id=599884 K6976_RS07255 WP_105212571.1 1477704..1479506(-) (pepF) [Streptococcus suis strain SS389]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=599884 K6976_RS07255 WP_105212571.1 1477704..1479506(-) (pepF) [Streptococcus suis strain SS389]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACCGATGATGCCTGGGA
AGCAGAACTTGCTGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCACTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGCGAAACGCAACTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATACCAGGAATTTCAAGCTAAAGCCATGGGCTTGTATTCGGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGTTGGAAGCCTTTAAGGCAGAGGAGCCAGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTTTAGCGGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTCGAATCACCTGCTGAAACTTTCTCAGTCTTGGACAATGCCAGCCTACGTTTCCCAGAAATCGCAGATGA
GGACGGTCACTTGGTGCCCCTTTCACACGGTAACTACATTCACTTTATGGAGTCTAAAAACCGCGACGTCCGCCAAGAAG
CCTATGAGGCTATGTACGGTACCTACGAGCAGTTCCAGCATACCTATGCTAAGACTTTGCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGTAAGTACGATTCAGCCCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTATCAGATTTCAGTACCAAGATTTCTTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTTTGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACTCTTATCCATGAAACAGGCCACTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGGTTCCGTGGCACTGTTT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCAATCTACAAGGCGGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAATGAGAAGTACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTATAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTTAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACCTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGCGTAGACATGACCAAGGAAGATTACCTCAACGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698