Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABWED_RS01660 Genome accession   NZ_CP082143
Coordinates   371807..373975 (+) Length   722 a.a.
NCBI ID   WP_374956146.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366807..378975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS01640 (ABWED_0339) pilM 368859..369917 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  ABWED_RS01645 (ABWED_0340) comN 369917..370555 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABWED_RS01650 (ABWED_0341) comO 370552..371262 (+) 711 WP_374956145.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABWED_RS01655 (ABWED_0342) pilP 371262..371789 (+) 528 WP_005248368.1 pilus assembly protein PilP Machinery gene
  ABWED_RS01660 (ABWED_0343) pilQ 371807..373975 (+) 2169 WP_374956146.1 type IV pilus secretin PilQ Machinery gene
  ABWED_RS01665 (ABWED_0344) aroK 374012..374548 (+) 537 WP_005101380.1 shikimate kinase AroK -
  ABWED_RS01670 (ABWED_0345) aroB 374577..375656 (+) 1080 WP_374956147.1 3-dehydroquinate synthase -
  ABWED_RS01675 (ABWED_0346) - 375667..376545 (+) 879 WP_004732438.1 hypothetical protein -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 78649.03 Da        Isoelectric Point: 5.0846

>NTDB_id=599478 ABWED_RS01660 WP_374956146.1 371807..373975(+) (pilQ) [Acinetobacter lwoffii strain ED23-35]
MNKSIKEFIFGDVNTMNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSKIPVATREASSVEVTSDAQRARLTVNLTDAGAFTTRVEGNTFILKINSATPVAIAQPVQQQSAQGIS
NIGFQRGAQGEGQVVIDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVTDFATPVSSVDAVNQNGSGVITIQSAE
SYEYMAYQTDNKLTISLKRPEAKSPLRPKTVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKGASSSG
SSSNTTNNDERESLLSSRGSVSIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNNNLLVGGSDTTLWDLREPELDSETGRWTYDIQRPDNLNVDLGVTSSGASRIAFGLISLSDFMLDLELSALQAD
GYGEVISTPKVLTADKQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTP
TGQLTINKNQITTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDIPYVGRLFRKDLKSDNKRELLIFVTPRIVNDSVSR
NH

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=599478 ABWED_RS01660 WP_374956146.1 371807..373975(+) (pilQ) [Acinetobacter lwoffii strain ED23-35]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGTTAATACAATGAATCGTGTGTTTCGTCAGTTTTCCATGGGTGC
TGTTGCGATTGCAGTGATGCAAGCGGCCAGTGCGCAGGTTTCAATGACCAATGTAGTACCCATGCAGCTTCCTGGACAAG
GAACTGAGATTCGGGTGATGTTCAATGGTTTGCCACCACAACCACAAGCCTACCAATTAGAATCACCGTCACGTTTGATT
CTGGACTTTGACAAGGCCCAACAGAATTTAAAACAAAGCAAAATTCCGGTCGCAACGCGTGAAGCCAGTTCAGTGGAGGT
CACTTCGGATGCACAGCGTGCCCGTTTGACGGTTAATCTGACAGATGCAGGTGCCTTTACCACTCGAGTAGAAGGCAATA
CTTTTATTCTTAAAATTAATTCGGCAACTCCTGTAGCCATAGCTCAACCTGTGCAGCAACAGTCGGCTCAGGGTATTAGC
AATATTGGTTTCCAGCGCGGTGCGCAAGGTGAAGGCCAGGTCGTTATTGATCTATTAGGGAATAATACTCCTGTTGATGT
ACAGCAGCAGGGTACCAAGGTTATTGTGCGCACTTTAGGTTCCAAGATTCCGGCTCATTTGACCCGCCGTCTTAATGTGA
CTGATTTTGCGACTCCGGTATCAAGTGTGGATGCTGTGAATCAAAATGGTTCAGGAGTCATTACGATTCAGTCTGCGGAA
AGTTATGAATATATGGCTTATCAGACTGATAACAAGCTGACCATCAGCTTGAAACGTCCGGAAGCTAAGAGCCCATTACG
TCCTAAAACTGTGGCTTATACCGGCAAGAAAATTTCCTTAGATTTCCAGGATATCGAAGTCCGTCGTGTTTTACAGCTTT
TAGCTGACTTCACTGATATTAATATGGTGGCCGCAGACAGTGTACAAGGCAATATTACTTTGCGCTTGAAAGAGGTACCT
TGGGATCAGGCGCTGGATATTGTGCTGAAAACCAAAAATCTGGATAAACGGCGCAATGGCAATGTGATCTGGATCGCACC
AGTTACAGAGCTGATAAAGGCTGAAGAGGAAGAAGCTAAGGCGATTAAGCAGAGTGTTGCACTTGCGCCTATCCAAACGG
AATATATGCAGCTCAGTTATGCCAAAGCCGCTGATATTGAGAAACTGATTACGCAGAATAAAGGCGCATCTAGTTCAGGT
AGTTCGAGTAACACTACAAATAATGATGAGAGAGAAAGCTTATTGAGTTCACGTGGCTCTGTGTCTATTGATGCACGAAC
CAATACTATTATTGTGAATGATACCCAGCCTTTTATTGATAAAATCCGTAATATGGTAGATCTGCTCGATGTACAGGTAA
AGCAGGTAATGGTTGAAGCACGTATTGTGCGAGCTACCACGGACTTCACCAAAGAAATGGGAGTGAAGTGGGGGATTCTG
TCTCAAGGAATTACCAACAATAATAATCTTCTGGTCGGTGGTAGTGACACGACGTTATGGGATCTTAGAGAGCCAGAACT
AGATAGTGAAACAGGTCGCTGGACCTACGATATTCAAAGACCAGATAACTTAAATGTGGATTTGGGGGTAACCAGTTCAG
GTGCCAGTCGTATTGCCTTTGGTTTGATCAGCCTTTCTGATTTTATGCTGGATCTTGAGCTTTCTGCACTTCAGGCAGAT
GGCTATGGTGAGGTGATTTCTACCCCTAAAGTACTGACTGCAGACAAGCAGAAAGCAACTGTTGCCTCTGGTTCTCAAAT
TCCGTATCAGTCAGCAGAGGGTGGTGGTGCGAATGCAGTATCTACTACGGAATTTATTGATGCTACGCTAAGTCTGGATG
TCACACCAAGCATTACGCCAGATGGCAAAGTACAGATGGAACTCAATATTACCAGTGACTCACCGGGTAACCCGACACCG
ACTGGACAGCTCACTATTAACAAAAACCAGATCACTACCAATGTCTTGGTGGACAATGGCGAAACCGTGGTTCTAGGCGG
TATTTTTGAGCAAGAAACCCGTAATGCACAAACTAAGGTACCTTTCTTGGGGGATATTCCTTATGTAGGACGTTTATTCC
GTAAAGATTTAAAGTCGGATAATAAACGTGAGCTACTGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGA
AATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-134)

Secretin and TonB N terminus short domain (STN)

(305-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)

Bacterial type II and III secretion system protein (Secretin)

(556-714)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.562

100

0.744
  pilQ Acinetobacter baumannii strain A118

73.425

100

0.742
  comQ Acinetobacter baylyi ADP1

70.711

99.307

0.702
  pilQ Pseudomonas aeruginosa PAK

41.583

96.26

0.4
  pilQ Legionella pneumophila strain Lp02

37.236

98.199

0.366
  pilQ Legionella pneumophila strain ERS1305867

37.269

97.368

0.363