Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABWED_RS01650 Genome accession   NZ_CP082143
Coordinates   370552..371262 (+) Length   236 a.a.
NCBI ID   WP_374956145.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365552..376262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS01635 (ABWED_0338) ponA 366168..368693 (-) 2526 WP_374956144.1 penicillin-binding protein PBP1a -
  ABWED_RS01640 (ABWED_0339) pilM 368859..369917 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  ABWED_RS01645 (ABWED_0340) comN 369917..370555 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABWED_RS01650 (ABWED_0341) comO 370552..371262 (+) 711 WP_374956145.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABWED_RS01655 (ABWED_0342) pilP 371262..371789 (+) 528 WP_005248368.1 pilus assembly protein PilP Machinery gene
  ABWED_RS01660 (ABWED_0343) pilQ 371807..373975 (+) 2169 WP_374956146.1 type IV pilus secretin PilQ Machinery gene
  ABWED_RS01665 (ABWED_0344) aroK 374012..374548 (+) 537 WP_005101380.1 shikimate kinase AroK -
  ABWED_RS01670 (ABWED_0345) aroB 374577..375656 (+) 1080 WP_374956147.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26808.31 Da        Isoelectric Point: 4.5995

>NTDB_id=599476 ABWED_RS01650 WP_374956145.1 370552..371262(+) (comO) [Acinetobacter lwoffii strain ED23-35]
MNNEEFDEFAQDVVAVPKNKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIAALAFAVIYFVMIRSTIESISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNAESAAANSTTQGAQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=599476 ABWED_RS01650 WP_374956145.1 370552..371262(+) (comO) [Acinetobacter lwoffii strain ED23-35]
ATGAATAATGAAGAATTCGATGAGTTCGCCCAAGATGTCGTCGCTGTACCCAAAAATAAAATGACTGTTGAAAAGTTTTT
TCAGCAATTCAATACATTAGATCCAAATAACTATGGTAGCTGGCCTTTGTCGGTCAAAATTACCTGCTGGATTTTTATTG
CGGCACTGGCATTTGCGGTGATTTACTTTGTCATGATCAGAAGCACGATTGAGTCAATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGCTGAATGAATTTCGCGAAAAAGAATCCAAATTACGCAATTTACAACAATATCAAATCCAGCTTCAGGAAAT
GGAAGCCCGTTTTAACCAGCAGTTAGAACAGTTGCCGAAAGAAACTGAAATTCCGGGTCTGGTTGAAGATATTAACCTGA
GCGGTGTGAATTCAGGCCTGAAGTTTAAAAATATCCGTCTAGAGCCTGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTGCGATTGAAGCTACTGGGGATTATCACGCTTTTGGTTCCTTTGTGAGCAGTATTGCCGGCTTGTCACGTATTGTTAC
GCTGCATGATTTCACCATTACCGGTACTGAAAACAAAGAGAAAAAATCTGAAATTCCGGTCATTGATTATGTAGTGAAAG
CCAAAACTTATCGTTATGTCGGTAATGCGGAAAGCGCTGCAGCTAATAGCACTACTCAGGGGGCGCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.511

100

0.678
  pilO Acinetobacter baumannii D1279779

65.574

100

0.678