Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ABWED_RS01645 Genome accession   NZ_CP082143
Coordinates   369917..370555 (+) Length   212 a.a.
NCBI ID   WP_004281141.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364917..375555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS01630 (ABWED_0337) - 365314..366117 (+) 804 WP_374956143.1 putative RNA methyltransferase -
  ABWED_RS01635 (ABWED_0338) ponA 366168..368693 (-) 2526 WP_374956144.1 penicillin-binding protein PBP1a -
  ABWED_RS01640 (ABWED_0339) pilM 368859..369917 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  ABWED_RS01645 (ABWED_0340) comN 369917..370555 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  ABWED_RS01650 (ABWED_0341) comO 370552..371262 (+) 711 WP_374956145.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABWED_RS01655 (ABWED_0342) pilP 371262..371789 (+) 528 WP_005248368.1 pilus assembly protein PilP Machinery gene
  ABWED_RS01660 (ABWED_0343) pilQ 371807..373975 (+) 2169 WP_374956146.1 type IV pilus secretin PilQ Machinery gene
  ABWED_RS01665 (ABWED_0344) aroK 374012..374548 (+) 537 WP_005101380.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23911.14 Da        Isoelectric Point: 4.9286

>NTDB_id=599475 ABWED_RS01645 WP_004281141.1 369917..370555(+) (comN) [Acinetobacter lwoffii strain ED23-35]
MARINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRIGDKFTIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEEAKEKAPSSIIPRVEESYGSFTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=599475 ABWED_RS01645 WP_004281141.1 369917..370555(+) (comN) [Acinetobacter lwoffii strain ED23-35]
ATGGCAAGAATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTCGTGGCAATCTGCGTGGG
GGCGCTGTTCTTAGGATTAGCAGCAGCAGGTTCTACCTGGTTTTATTATGATCACAAGCTTCAGGATCAGGAACAGGCCA
ATCAGCTGATTCAAAGTACCAACCAGAATCTGGATGTGCAGTTAAAGGCGCTTGAAGGTTTACAAGAACAGCGTAATGCA
ATTGTTGAACGGATGAAACTGATTCAGGGCCTACAAACCCAACGTCCGATTGCAGTGCATCTGATTGATGAAATTGTGCG
GGTGACCCCAAGCAATATGTATATCACCAAATTCCAGCGTATCGGTGATAAGTTTACCATTGAAGGTCGAGCTGAGAGTC
CAAATACGGTAGCAGAACTGCTCCGTAATCTGGAAGCTTCATCTTGGTATCGGAATGCCTTTATGAATGCCTTCCTGGTG
GCTGAAGAAGCAAAAGAAAAGGCACCGAGCTCGATTATTCCACGTGTGGAAGAATCTTATGGCAGTTTTACTGTAACTGT
GGATCTGGATCAGATCGCTCAGCCAGTACTTAACGAAGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

66.986

98.585

0.66
  pilN Acinetobacter baumannii D1279779

70.984

91.038

0.646