Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6L24_RS20580 Genome accession   NZ_CP082141
Coordinates   4456755..4458275 (+) Length   506 a.a.
NCBI ID   WP_062749117.1    Uniprot ID   -
Organism   Erwinia persicina strain Cp2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4451755..4463275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6L24_RS20560 (K6L24_20560) - 4453332..4454258 (-) 927 WP_222681794.1 branched-chain amino acid transaminase -
  K6L24_RS20565 (K6L24_20565) ilvM 4454277..4454534 (-) 258 WP_062749113.1 acetolactate synthase 2 small subunit -
  K6L24_RS20570 (K6L24_20570) ilvG 4454531..4456177 (-) 1647 WP_137270081.1 acetolactate synthase 2 catalytic subunit -
  K6L24_RS20575 (K6L24_20575) ilvL 4456318..4456416 (-) 99 WP_072277511.1 ilv operon leader peptide -
  K6L24_RS20580 (K6L24_20580) comM 4456755..4458275 (+) 1521 WP_062749117.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6L24_RS20585 (K6L24_20585) - 4458309..4458647 (-) 339 WP_062749119.1 DUF413 domain-containing protein -
  K6L24_RS20590 (K6L24_20590) hdfR 4458769..4459596 (+) 828 WP_062749121.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54578.74 Da        Isoelectric Point: 7.9426

>NTDB_id=599459 K6L24_RS20580 WP_062749117.1 4456755..4458275(+) (comM) [Erwinia persicina strain Cp2]
MSLSVVFTRAALGIQAPQVSVEVHLSNGLPALSLVGLPETTVKEARDRVRSAIINSGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPADKLSGYEFLGELALTGALRSVQGAIPAAVAALDCGRQLILSAENQNDVGLIQHGESLVATCL
LAVCTFLHGKGTLEAAQCQEPPSPPLSGDLNEIIGQHQARRALEVTAAGGHNLLLIGPPGTGKTMLASRLCGLMPPLSDR
EALESASVASLVGSGELHRQWRQRPFRSPHHSASLFALVGGGSLPKPGEISLAHNGILFLDELPEFERRTLDALREPLES
GEISISRARAKITYPARFQLIAAMNPSPTGHYTGQHNRSSPRQTLRYLSRLSGPFLDRFDLSLEVPLLPPGMLSGQPRGG
ESSEKVRERVLRARDRQLGRCGKVNALMSNHEIQACCTLTPVDAEWLEQILVQLGLSVRAWQRILKVARTIADLAGDSVI
RREHLTEAISYRAIDRLLIHLHNSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=599459 K6L24_RS20580 WP_062749117.1 4456755..4458275(+) (comM) [Erwinia persicina strain Cp2]
ATGTCGCTATCTGTCGTGTTTACCCGCGCCGCACTGGGCATCCAGGCCCCTCAGGTGTCGGTAGAAGTCCATCTCAGCAA
TGGTCTGCCGGCGCTTTCGCTGGTCGGACTGCCGGAAACCACGGTGAAAGAGGCCCGCGACCGTGTACGCAGCGCCATTA
TCAACAGTGGTTTCACTTTCCCGGCAAAGCGGATCACCGTTAATCTCGCCCCCGCCGACCTGCCTAAAGAGGGCGGCAGG
TATGATTTGCCCATCGCTATCGCCATCCTTGCCGCCTCAGAGCAGATCCCGGCGGATAAACTCTCAGGCTATGAATTCCT
CGGCGAACTGGCGCTGACGGGTGCGCTACGCAGCGTACAGGGCGCTATTCCGGCGGCCGTTGCGGCTCTGGACTGTGGGC
GGCAGCTGATTCTCTCTGCGGAAAATCAGAATGATGTTGGATTAATTCAGCATGGGGAGAGCCTGGTAGCCACCTGCCTG
CTGGCGGTGTGTACCTTCCTGCACGGCAAAGGGACGCTGGAAGCGGCACAGTGTCAGGAGCCGCCGTCCCCTCCCCTTTC
AGGTGATTTAAATGAAATTATTGGTCAGCATCAGGCCAGGCGGGCGCTGGAGGTCACGGCCGCAGGCGGGCATAATCTTT
TACTGATCGGCCCGCCGGGAACAGGGAAAACAATGCTGGCATCCCGCCTGTGTGGACTGATGCCACCTCTAAGCGATCGT
GAGGCCCTGGAGAGCGCCAGCGTAGCCAGTCTGGTGGGTAGCGGGGAGCTGCACCGTCAGTGGCGTCAGAGGCCGTTTCG
CTCCCCTCATCACAGTGCATCGCTCTTTGCGCTGGTCGGTGGTGGATCGCTGCCTAAACCGGGGGAAATTTCACTGGCGC
ATAACGGCATCCTCTTTCTGGACGAACTCCCGGAATTTGAACGCCGGACGCTGGATGCGTTACGAGAGCCTCTTGAGTCT
GGGGAGATCAGTATTTCACGGGCCCGGGCGAAAATAACCTATCCGGCACGCTTCCAGTTAATTGCTGCCATGAACCCCAG
CCCGACCGGTCACTATACGGGACAACACAATCGCAGCTCGCCGCGCCAGACGCTACGCTATCTTAGTCGCCTTTCGGGCC
CCTTTCTTGACCGCTTCGATCTCTCCCTTGAGGTCCCTTTACTCCCTCCGGGCATGTTGAGTGGTCAGCCGCGTGGCGGC
GAGTCCAGTGAAAAAGTACGTGAGCGGGTATTGAGGGCACGAGATCGCCAGCTGGGACGCTGTGGCAAAGTGAATGCGTT
AATGAGCAACCACGAAATACAGGCATGCTGTACACTTACGCCAGTGGATGCGGAATGGCTGGAGCAGATACTGGTGCAAC
TGGGCCTGTCAGTGCGGGCGTGGCAACGTATTTTGAAGGTGGCACGTACGATTGCCGACCTGGCGGGGGACAGCGTAATC
AGACGGGAGCATTTGACTGAAGCAATAAGCTATCGGGCCATCGACCGTCTGCTGATTCATCTGCATAACAGCCTCGAATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.811

100

0.621
  comM Glaesserella parasuis strain SC1401

61.341

100

0.615
  comM Vibrio campbellii strain DS40M4

61.355

99.209

0.609
  comM Vibrio cholerae strain A1552

60.474

100

0.605
  comM Legionella pneumophila str. Paris

47.8

98.814

0.472
  comM Legionella pneumophila strain ERS1305867

47.8

98.814

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.664

100

0.447