Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   NB629_RS12735 Genome accession   NZ_CP098253
Coordinates   2610308..2611312 (+) Length   334 a.a.
NCBI ID   WP_001005767.1    Uniprot ID   Q6GG63
Organism   Staphylococcus aureus strain M0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2605308..2616312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB629_RS12700 (NB629_12700) mreD 2605660..2606190 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  NB629_RS12705 (NB629_12705) rplU 2606483..2606791 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  NB629_RS12710 (NB629_12710) - 2606797..2607117 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  NB629_RS12715 (NB629_12715) rpmA 2607129..2607413 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  NB629_RS12720 (NB629_12720) obgE 2607900..2609192 (+) 1293 WP_000496092.1 GTPase ObgE -
  NB629_RS12725 (NB629_12725) - 2609205..2609660 (+) 456 WP_000368902.1 ACT domain-containing protein -
  NB629_RS12730 (NB629_12730) ruvA 2609674..2610276 (+) 603 WP_000271546.1 Holliday junction branch migration protein RuvA Machinery gene
  NB629_RS12735 (NB629_12735) ruvB 2610308..2611312 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NB629_RS12740 (NB629_12740) queA 2611314..2612339 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NB629_RS12745 (NB629_12745) tgt 2612362..2613501 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  NB629_RS12750 (NB629_12750) yajC 2613520..2613780 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37718.00 Da        Isoelectric Point: 5.0865

>NTDB_id=598940 NB629_RS12735 WP_001005767.1 2610308..2611312(+) (ruvB) [Staphylococcus aureus strain M0]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=598940 NB629_RS12735 WP_001005767.1 2610308..2611312(+) (ruvB) [Staphylococcus aureus strain M0]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGCTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACA
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCGCGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515