Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6134_RS04545 Genome accession   NZ_CP082045
Coordinates   970492..971121 (+) Length   209 a.a.
NCBI ID   WP_077599027.1    Uniprot ID   -
Organism   Escherichia coli strain MS21324     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 965492..976121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6134_RS04525 (K6134_04510) ycbZ 965892..967652 (-) 1761 WP_000156501.1 Lon protease family protein -
  K6134_RS04530 (K6134_04515) matP 967838..968290 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K6134_RS04535 (K6134_04520) ompA 968368..969408 (-) 1041 WP_001350588.1 porin OmpA -
  K6134_RS04540 (K6134_04525) sulA 969764..970273 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  K6134_RS04545 (K6134_04530) sxy/tfoX 970492..971121 (+) 630 WP_077599027.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6134_RS04550 (K6134_04535) yccS 971084..973246 (-) 2163 WP_000875041.1 YccS family putative transporter -
  K6134_RS04555 (K6134_04540) yccF 973256..973702 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K6134_RS04560 (K6134_04545) helD 973825..975879 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24115.06 Da        Isoelectric Point: 9.2180

>NTDB_id=598940 K6134_RS04545 WP_077599027.1 970492..971121(+) (sxy/tfoX) [Escherichia coli strain MS21324]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRTQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=598940 K6134_RS04545 WP_077599027.1 970492..971121(+) (sxy/tfoX) [Escherichia coli strain MS21324]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAACTCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986