Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NB629_RS12730 Genome accession   NZ_CP098253
Coordinates   2609674..2610276 (+) Length   200 a.a.
NCBI ID   WP_000271546.1    Uniprot ID   Q6GG62
Organism   Staphylococcus aureus strain M0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2604674..2615276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB629_RS12695 (NB629_12695) mreC 2604818..2605660 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  NB629_RS12700 (NB629_12700) mreD 2605660..2606190 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  NB629_RS12705 (NB629_12705) rplU 2606483..2606791 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  NB629_RS12710 (NB629_12710) - 2606797..2607117 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  NB629_RS12715 (NB629_12715) rpmA 2607129..2607413 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  NB629_RS12720 (NB629_12720) obgE 2607900..2609192 (+) 1293 WP_000496092.1 GTPase ObgE -
  NB629_RS12725 (NB629_12725) - 2609205..2609660 (+) 456 WP_000368902.1 ACT domain-containing protein -
  NB629_RS12730 (NB629_12730) ruvA 2609674..2610276 (+) 603 WP_000271546.1 Holliday junction branch migration protein RuvA Machinery gene
  NB629_RS12735 (NB629_12735) ruvB 2610308..2611312 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NB629_RS12740 (NB629_12740) queA 2611314..2612339 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NB629_RS12745 (NB629_12745) tgt 2612362..2613501 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  NB629_RS12750 (NB629_12750) yajC 2613520..2613780 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22292.44 Da        Isoelectric Point: 5.6716

>NTDB_id=598939 NB629_RS12730 WP_000271546.1 2609674..2610276(+) (ruvA) [Staphylococcus aureus strain M0]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTEQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=598939 NB629_RS12730 WP_000271546.1 2609674..2610276(+) (ruvA) [Staphylococcus aureus strain M0]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTCACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACACCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGAGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425