Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5K95_RS10855 Genome accession   NZ_CP081946
Coordinates   2372984..2374048 (+) Length   354 a.a.
NCBI ID   WP_222589430.1    Uniprot ID   -
Organism   Pseudomonas sp. DR48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2367984..2379048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K95_RS10845 (K5K95_10845) - 2368797..2370065 (+) 1269 WP_090176589.1 malic enzyme-like NAD(P)-binding protein -
  K5K95_RS10850 (K5K95_10850) - 2370325..2372766 (-) 2442 WP_405046075.1 penicillin-binding protein 1A -
  K5K95_RS10855 (K5K95_10855) comM 2372984..2374048 (+) 1065 WP_222589430.1 pilus assembly protein PilM Machinery gene
  K5K95_RS10860 (K5K95_10860) - 2374048..2374614 (+) 567 WP_222589431.1 PilN domain-containing protein -
  K5K95_RS10865 (K5K95_10865) pilO 2374611..2375234 (+) 624 WP_222589432.1 type 4a pilus biogenesis protein PilO -
  K5K95_RS10870 (K5K95_10870) - 2375231..2375758 (+) 528 WP_222589433.1 pilus assembly protein PilP -
  K5K95_RS10875 (K5K95_10875) pilQ 2375772..2377847 (+) 2076 WP_222589434.1 type IV pilus secretin PilQ Machinery gene
  K5K95_RS10880 (K5K95_10880) aroK 2377852..2378370 (+) 519 WP_222589435.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38127.61 Da        Isoelectric Point: 4.8939

>NTDB_id=598646 K5K95_RS10855 WP_222589430.1 2372984..2374048(+) (comM) [Pseudomonas sp. DR48]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPTNAVVEKNIAELEGVGQALARVLAKAKTSLRNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGASVRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSYSLLATHLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYLSEVLQPFRDALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FANMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=598646 K5K95_RS10855 WP_222589430.1 2372984..2374048(+) (comM) [Pseudomonas sp. DR48]
GTGCTAGGACTCTTCAACAAGAAAGCCAATACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTATTAGAGCT
TAGTCGCCAAGGCGACCGTTATCGGGTTGAAGCCTATGCGGTCGAACCGTTGCCCACCAACGCCGTGGTCGAAAAAAATA
TCGCCGAGCTCGAAGGCGTGGGGCAGGCACTCGCGCGCGTGCTGGCAAAGGCCAAGACCAGTCTGCGGAACGTTGCCGTG
GCCGTCGCCGGCTCGGCCGTCATCACCAAGACCATCGAGATGGACGCCGGTCTTTCCGACGACGAGATGGAAAACCAGCT
CAAGATCGAAGCGGATCAGTACATTCCTTACCCTTTGGATGAGGTCGCCATCGACTTCGAAGTCCAGGGCGCTTCGGTGC
GTAACCCTGAGCGGGTCAATGTGCTGTTGGCGGCCTGTCGCAAGGAAAACGTCGAAGTGCGTGAAGCGGCTCTGGCCCTC
GCCGGCCTGACCGCTCGCGTGGTGGACGTCGAGGCCTACGCGCTGGAGCGCTCCTATTCTTTGCTGGCAACCCATCTGGC
GGCCTCTCAGGAGCGTTTGACGGTGGCAGTGGTCGATATTGGCGCCACCATGACCACCCTCAGCGTCCTCCATAACGGGC
GGATCATCTACACCCGCGAACAATTGTTCGGCGGTCGCCAGCTCACGGAGGAAATCCAGCGCCGTTATGGCCTGACCCTC
GAGCAGGCCGGGCTTGCGAAAAAACAGGGTGGATTGCCGGACGACTACCTCAGCGAAGTATTGCAGCCTTTTCGCGATGC
GCTGGTGCAGCAGGTTTCCCGTTCATTGCAGTTCTTCTTCGCCTCCGGTCAATACAACGCGGTCGATCACATTCTGCTGG
CCGGTGGTACCGCGTCGGTCCCGGGGCTTGACCGGTTGATCGAACAACGGCTCGGTACGCCGACCCAGGTGGCTAATCCG
TTCGCCAATATGGCGCTGAGCAGCAAGGTCAATGCGGGCGCCCTGGCGAGCGATGCGCCGGCCTTGATGATCGCCTGTGG
ACTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

57.627

100

0.576
  pilM Acinetobacter baumannii D1279779

57.345

100

0.573
  comM Acinetobacter baylyi ADP1

54.802

100

0.548
  pilM Legionella pneumophila strain ERS1305867

48.588

100

0.486