Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K5Q02_RS06890 Genome accession   NZ_CP081942
Coordinates   1535653..1537794 (+) Length   713 a.a.
NCBI ID   WP_225837682.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1530653..1542794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS06870 (K5Q02_06845) pilM 1532827..1533891 (+) 1065 WP_225837674.1 pilus assembly protein PilM Machinery gene
  K5Q02_RS06875 (K5Q02_06850) - 1533891..1534463 (+) 573 WP_225837676.1 PilN domain-containing protein -
  K5Q02_RS06880 (K5Q02_06855) pilO 1534460..1535083 (+) 624 WP_225837678.1 type 4a pilus biogenesis protein PilO -
  K5Q02_RS06885 (K5Q02_06860) pilP 1535080..1535598 (+) 519 WP_225837680.1 type 4a pilus biogenesis lipoprotein PilP -
  K5Q02_RS06890 (K5Q02_06865) pilQ 1535653..1537794 (+) 2142 WP_225837682.1 type IV pilus secretin PilQ Machinery gene
  K5Q02_RS06895 (K5Q02_06870) aroK 1537798..1538316 (+) 519 WP_225837684.1 shikimate kinase AroK -
  K5Q02_RS06900 (K5Q02_06875) aroB 1538368..1539474 (+) 1107 WP_225837686.1 3-dehydroquinate synthase -
  K5Q02_RS06905 (K5Q02_06880) - 1539482..1541080 (+) 1599 WP_225837687.1 AAA family ATPase -

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 76498.70 Da        Isoelectric Point: 4.6931

>NTDB_id=598559 K5Q02_RS06890 WP_225837682.1 1535653..1537794(+) (pilQ) [Pseudomonas sp. MM211]
MNSSLSRLSISLLVAMLSPAVLAANLQALDVAALPGDRVELKLSFDEPVTAPRGYTIEQPARIALDLPGVTNKLGVKNRE
LGMGNARSVTVVEAKDRTRLIINLTSLSPYNTRTEGNNLFVQVGAGVATTAAAPVSTAGAVQPATPVAAPAAPKVFGAVN
KAISNIDFQRGEQGEGNIVIDLSDASVSPDIQERGGKIILNFNRTQLPEALRVRLDVKDFATPVQFVSASGAGDDASIVI
EPVGAFDYLAYQTENKLTLSVKPLTQEDADKRQAERFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVAGNITL
RLQNVPWDQALDLVLKTKGLDKRQIGNVLLVAPAEEIAARERQELESQKQIAELAPLRRELIQVNYAKAADMAKLFQSVT
SANGGVADDRGSITVDDRTNSIIAYQTQERLDELRRIVAQLDVAVRQVMIEARIVEARVNYDKALGVRWGGSARRGGWDV
SGKDGVQAFDEDTGQRAGFVGTDTIGSTTLDDGLARLPFVDMGVTNSTSGIGIGFLSNNVVLDLQLSAMENSGNGEIVSQ
PKVVTSDKETAKILKGQEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANAVNGVPPINKNE
VNAKVLVADGETIVIGGVFENTQTKSTEKVPFLGDVPYLGRLFRRDMVTDNKTELLVFITPRIMNTSAVAVSR

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=598559 K5Q02_RS06890 WP_225837682.1 1535653..1537794(+) (pilQ) [Pseudomonas sp. MM211]
ATGAACAGCTCTCTCTCTCGCCTAAGCATTTCGCTACTGGTGGCTATGCTCTCTCCTGCCGTCCTGGCGGCCAACCTGCA
GGCGCTGGATGTGGCTGCTCTGCCGGGTGACCGCGTCGAGCTGAAACTGTCTTTCGACGAGCCGGTGACGGCGCCGCGCG
GCTACACCATCGAGCAACCCGCGCGTATCGCGCTGGATCTGCCCGGGGTTACCAACAAACTCGGCGTGAAGAATCGCGAG
CTGGGGATGGGCAACGCCCGCAGCGTGACTGTTGTCGAGGCCAAAGACCGCACTCGTCTGATCATCAACTTGACCAGTCT
GTCGCCTTATAACACCCGCACTGAAGGCAACAACCTGTTTGTACAGGTTGGCGCGGGTGTTGCCACGACCGCTGCTGCTC
CGGTGAGTACGGCAGGCGCTGTTCAGCCTGCAACCCCTGTCGCCGCTCCGGCCGCCCCCAAGGTGTTCGGCGCGGTGAAC
AAGGCAATCAGTAATATCGACTTCCAGCGTGGCGAGCAGGGTGAGGGCAACATTGTTATCGATTTGTCCGATGCTTCTGT
GAGTCCCGATATTCAGGAGCGCGGCGGCAAGATCATCCTGAATTTCAACCGTACGCAATTGCCTGAAGCGCTGCGTGTGC
GGTTGGATGTGAAGGACTTCGCTACACCGGTGCAGTTCGTCAGTGCCAGCGGCGCGGGTGATGATGCGAGCATCGTTATC
GAGCCCGTTGGTGCTTTCGACTACTTGGCCTATCAGACCGAGAACAAGCTGACCCTGAGCGTCAAGCCGCTGACCCAGGA
AGATGCTGATAAGCGTCAGGCTGAGCGCTTTGCTTATACCGGCGAGAAGCTGTCTCTGAACTTTCAGGACATTGACGTAC
GTTCGGTGCTGCAGCTGATTGCTGACTTTACTGACCTTAATCTGGTCGCCAGTGACACGGTGGCTGGCAATATCACCCTG
CGCCTGCAGAACGTGCCATGGGATCAGGCGCTGGATCTGGTGCTTAAAACCAAGGGGTTGGACAAGCGCCAGATTGGCAA
CGTGCTGCTGGTTGCGCCCGCTGAAGAAATCGCCGCGCGTGAGCGTCAGGAGCTGGAGTCGCAGAAGCAGATTGCCGAAC
TGGCACCGCTGCGTCGCGAACTGATTCAGGTCAACTACGCCAAGGCGGCCGATATGGCCAAGCTGTTCCAGTCGGTGACC
AGTGCCAATGGCGGCGTAGCGGATGATCGGGGTTCTATTACCGTCGATGATCGCACCAACAGCATCATCGCTTATCAGAC
TCAAGAGCGTTTGGACGAACTGCGCCGCATCGTGGCTCAGCTCGATGTGGCGGTTCGTCAGGTGATGATTGAAGCGCGTA
TCGTTGAGGCCAGAGTCAACTACGACAAAGCGTTGGGTGTCCGTTGGGGGGGGAGCGCAAGACGAGGTGGGTGGGATGTA
AGTGGTAAGGATGGGGTTCAGGCATTTGATGAAGATACAGGTCAGCGTGCAGGCTTTGTTGGGACTGACACTATTGGCAG
CACGACGCTGGATGATGGATTGGCGCGCTTACCTTTCGTAGATATGGGCGTAACCAACAGCACTTCTGGTATCGGTATTG
GCTTCCTGAGTAATAATGTTGTACTAGATCTGCAGCTTTCCGCGATGGAGAACTCGGGCAATGGCGAAATAGTTTCCCAG
CCGAAAGTGGTCACTTCTGACAAGGAGACGGCGAAAATTCTCAAGGGGCAGGAAGTGCCTTATCAGGAAGCAAGCTCAAG
TGGTGCCACTTCGACATCCTTCAAAGAGGCGGCATTGTCCTTGGAAGTGACGCCACAGATCACGCCAGATAACCGGATTA
TCATGGAAGTTAAGGTGACCAAGGATGCGCCAGACTTTGCTAATGCCGTCAATGGCGTGCCGCCGATCAACAAGAACGAA
GTCAATGCCAAGGTTCTGGTTGCAGATGGTGAGACCATCGTGATTGGTGGGGTGTTTGAAAATACCCAAACCAAGTCCAC
GGAGAAGGTGCCTTTCCTGGGGGATGTGCCTTACCTTGGACGTCTGTTCCGCCGCGACATGGTGACTGACAACAAGACCG
AGTTGCTGGTTTTCATCACTCCGCGCATCATGAACACTTCCGCGGTGGCCGTGAGTCGGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(307-353)

Bacterial type II and III secretion system protein (Secretin)

(548-704)

AMIN domain (AMIN)

(38-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

75.382

100

0.76
  pilQ Acinetobacter baumannii strain A118

39.338

100

0.417
  pilQ Acinetobacter baumannii D1279779

39.338

100

0.417
  comQ Acinetobacter baylyi ADP1

41.102

99.299

0.408